Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 406 / 2e-135 Major facilitator superfamily protein (.1) AT1G33440 399 / 3e-132 Major facilitator superfamily protein (.1) AT1G27040 393 / 1e-130 Major facilitator superfamily protein (.1.2) AT1G69850 387 / 5e-128 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G62730 370 / 2e-121 Major facilitator superfamily protein (.1) AT3G54140 364 / 2e-119 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 361 / 4e-118 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G25280 357 / 4e-117 Major facilitator superfamily protein (.1) AT5G13400 353 / 1e-114 Major facilitator superfamily protein (.1) AT2G02040 350 / 7e-114 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G001400 [exp] 681 / 0 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 530 / 0 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 529 / 0 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 461 / 1e-156 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 408 / 6e-136 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 405 / 7e-135 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 395 / 2e-131 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 382 / 4e-126 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.019G067500 [exp] 382 / 1e-125 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 534 / 0 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 533 / 0 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 487 / 1e-167 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10005417 [exp] 454 / 2e-154 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10015240 [exp] 452 / 3e-153 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10036710 [exp] 402 / 7e-134 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 402 / 7e-134 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 400 / 4e-133 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10024457 [exp] 399 / 3e-132 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10013276 [exp] 397 / 3e-132 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G272900.1 pacid=42790436 polypeptide=Potri.001G272900.1.p locus=Potri.001G272900 ID=Potri.001G272900.1.v4.1 annot-version=v4.1 ATGGATGGCCTCAATACATCTAGCAGACGAAAAGGCGGCTTCCGAGCTTGCACTTTTATCTTCACTTTGGGAGCCCTGGAGAACATGGGATTTATAGCTA ACATGGCAAGCTTGGTTCTATATTTTTATTATATCATGCATTTCGACATAGCCACTTCAGCAAATACGCTCACCAACTTCATGGGTTCGGTTTTCATGCT CTCTCTTGTTGGAGCCTTCATTGCTGATACTTTCTTGAACCGATTCTATACTTGCCTCTTATTTGGAATAATGGAAGTCATGGGTCTTGCATTGCTTACA ACTCAAGCTTATTTCAAGGATTTGCAGCCTGAATTTTGTCTCAGGTCAACTTGTGTCGAAGGTGGCCAAGCAGTTATGTTATATGGATCTCTTTGTCTGT ATGCACTAGGTTCAGGTGGAGTTAAGGGGGCTATTCCTGCACTAGGTGGAGACCAGTTTGATCATCATCAACAGAAGAAAGGGGCGCTTGCTCGTTATTA TAACTGGAACCTTCTAATTTCAACCACTGGATCAATAGTTGGAGTCACAGCTGTTGTGTGGGTTAGCATGAACAAGGGGTGGTACAAAGGTTTTTTCGTT TCAACTGTGGCTACCTTGATTGGATTCACTGTTCTTGCCCTTGGGAAGCCTTTCTACCGCATCCAGCCACCTGGAAATAGTACTTTCGTTAGGATAGCAC AGGTCATAGCGGTCACGTTCCGGAATAGGGACTTGTCTCTGCCAAAAAATCCTGACAAACTCTTCGAGATCCATGATGCGTCAAGAGATCCATCTGAAGA GAGACTTTCACATTCCAATCAATTCAGATTGCTAGACAAAGCTGCTATTCTTAGAGAAGGAACGGAGCCACAGCCTTGGAAAGTTTGCACAGTGACCCAA GTTGAAGAAGTAAAGATTATAATAAGGATGATCCCCATCATAGCCAGTACAATTTTAATGAACACAAGTATGGCACAGCTACAAACATTCTCAGTACAAC AAGGGGTCACCATGGATGCACATCTTGGCACCAAAACAATCCCAACCCCATCTATTCCGGTGATTCCTCTGGTTTTCATGTCTGTCCTCATTCCCATTTA TGAATTTGTTGCCGTCCCGTTTGCTCGAAAGATAACCGGCCATCCATCCGGTATAACGCAGCTTCAACGTGTCGGAGTTGGTCTTGTTCTGTCCATTCTG TCAATGGCCGTGGCAGGTTTTATTGAACTGTACAGAAAACACGAGGTCCACAAGAATCCACCAAACAAAATCAGTGTTTTTTGGCTTTCCTTCCAATATG GCATTTTTGGGATTGCAGACATGTTCACAGTTGTTGGATTGTTGGAGTTTTTCTACAATGAAGCTCCATCAGGAATGAGATCTGTATCTACTTCTTTCAC ATGGTTAACATTGGCTCTGGGATACTTCACCAGCACTGTCTTTGTTGATATCATAAACTCTGTCACCAAGAGAATCACTCCAAGCAAACAAGGATGGTTA CATGGGAATGACCTCAACTCCAATAATCTGAACCTCTTCTACTGGTTTTTGGCTATCCTTAACGTCATCAATTTTGTCTTCTATCTCTTCTCGGCTTCCT GGTACAAGTACAAGAGTGATGACCGAGAATCAGAGACCATAGCAAAGGCAGAGAAAGGACCGAATGGTGAGATCACTCTGGTTAAGTAG
AA sequence Show only first row Show all	>Potri.001G272900.1 pacid=42790436 polypeptide=Potri.001G272900.1.p locus=Potri.001G272900 ID=Potri.001G272900.1.v4.1 annot-version=v4.1 MDGLNTSSRRKGGFRACTFIFTLGALENMGFIANMASLVLYFYYIMHFDIATSANTLTNFMGSVFMLSLVGAFIADTFLNRFYTCLLFGIMEVMGLALLT TQAYFKDLQPEFCLRSTCVEGGQAVMLYGSLCLYALGSGGVKGAIPALGGDQFDHHQQKKGALARYYNWNLLISTTGSIVGVTAVVWVSMNKGWYKGFFV STVATLIGFTVLALGKPFYRIQPPGNSTFVRIAQVIAVTFRNRDLSLPKNPDKLFEIHDASRDPSEERLSHSNQFRLLDKAAILREGTEPQPWKVCTVTQ VEEVKIIIRMIPIIASTILMNTSMAQLQTFSVQQGVTMDAHLGTKTIPTPSIPVIPLVFMSVLIPIYEFVAVPFARKITGHPSGITQLQRVGVGLVLSIL SMAVAGFIELYRKHEVHKNPPNKISVFWLSFQYGIFGIADMFTVVGLLEFFYNEAPSGMRSVSTSFTWLTLALGYFTSTVFVDIINSVTKRITPSKQGWL HGNDLNSNNLNLFYWFLAILNVINFVFYLFSASWYKYKSDDRESETIAKAEKGPNGEITLVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59740			Major facilitator superfamily ...		Potri.001G272900 [exp]	0	1
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Potri.006G091300 [exp]	3.46	0.9231
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	3.74	0.9076
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.001G280100 [exp]	4.24	0.8999
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.001G220700 [exp]	5.09	0.8937
					Potri.008G206733 [exp]	5.19	0.9185
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	5.38	0.9376	Pt-AGL8.2
AT4G34090			unknown protein		Potri.007G045900 [exp]	12.44	0.9236
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.015G101200 [exp]	13.41	0.8831
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.003G158500 [exp]	13.96	0.8806
AT5G01350			unknown protein		Potri.006G101901 [exp]	15.68	0.8786

Compare expression of checked genes

Potri.001G272900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.