Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11900 272 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 117 / 1e-28 RPF2 rna processing factor 2 (.1) AT1G62590 116 / 3e-28 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G59900 116 / 3e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 115 / 7e-28 GUN1 genomes uncoupled 1 (.1) AT1G63330 115 / 7e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 115 / 8e-28 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 115 / 9e-28 PGR3 proton gradient regulation 3 (.1) AT3G06920 112 / 7e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G51965 110 / 3e-26 ABO5 ABA Overly-Sensitive 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067400 [exp] 627 / 0 AT1G11900 258 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 125 / 3e-31 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 116 / 5e-28 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 115 / 9e-28 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G297300 [exp] 112 / 1e-26 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 109 / 9e-26 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 109 / 1e-25 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 107 / 4e-25 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 107 / 6e-25 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 120 / 2e-29 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 119 / 4e-29 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10012068 [exp] 114 / 2e-27 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 112 / 9e-27 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 111 / 3e-26 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 110 / 4e-26 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10043417 [exp] 109 / 1e-25 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 108 / 1e-25 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011464 [exp] 108 / 2e-25 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002107 [exp] 108 / 2e-25 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G273100.9 pacid=42790684 polypeptide=Potri.001G273100.9.p locus=Potri.001G273100 ID=Potri.001G273100.9.v4.1 annot-version=v4.1 ATGAGAAATTTTGTAAATGTGGTAGCGAGATCCTTCTCTCTATCAAGCAGCCTCCTTTCACATCTTCATAAAGTTCAGTTCTCTCCTCGAAAGAATCGTA TCATATCCATCCTTGTTGGTTCTCAGATTTCACCCCACTTAGCTACTATAACTGAAGTCATTGATCATTGCAAACGACTCACAACACGGGTGTCTTTTGA TGAAGGGGAGGTCAAAGATGATAACTTGAATCAAATGCTTAATGCTGTTGAAAATGCCCCAGAATCTGCCACCAGAAAAATCGGAACTGCTTATGTCCAT AACTTGTGTAAAGCTGGAAACCTTTTCACTGCGGTTAGACTGCTGCAATCATTATGTGATAAAAACATTTTCCTTGGCCCTAGTGCTTATAATATCATTT TGGTGGCAGCTAGTGAAAAAAATGATATTGCGATTTTGTCCCAGGTTTTTAAGGATTTGATTGTGTCTTGTCAGTCTTTGCCTTCGACTTCGTATCTGAA ACTTGCCAGGGGTTTTGTGAAGACAAATGATGATGTCCAGCTACTGAGACTTGTCAAAGAAGTTTCTGAAATGACATTCCCGAGTAGCATGATGGTTGTA AATAGAATTATCTTTGCCTTTGCTGAATGTGGGCAGTTTGACAAAGCCCTTCTGATATTTAAGCAGATGGAGAATCTGAAATGTAAGCCGGATTTGGTCA CGTATAATACTGTTTTGGATCTTTTAGGTCATGCAGGTCGGATTGATGAAATGCTCTGTGAGTTTGCCTCCATGAAGGAAGCAGGAATTCTCCCAGATTT TATTTCTTACAATACTTTGCTAAATCAGTTATGGAAGGTAGGAAGATTGGATTTGTGTTCGGTGTATTCCCGGGACATGGTTGAGAGTGGAATTGAACCA GATTTGCTTACATATACTGCATTGATTGGGAGCTTTGGCCAATCTGGAAACATTGAGGAATCATTGAGACTCTTCAATGAGATGAAGACAAAGCAGATCC GCCCATCTATTTATATATATCGATCGTTAATTGCCAGTTTGAAGAAGATGGGTAAGGTGGAATTGGCAATGACCCTTTTGGAAGAGATGAATGCATCAAT GTCAAACCTAGCCGGTCATAAGGATTTCAAACGAACACGCAAGTAG
AA sequence Show only first row Show all	>Potri.001G273100.9 pacid=42790684 polypeptide=Potri.001G273100.9.p locus=Potri.001G273100 ID=Potri.001G273100.9.v4.1 annot-version=v4.1 MRNFVNVVARSFSLSSSLLSHLHKVQFSPRKNRIISILVGSQISPHLATITEVIDHCKRLTTRVSFDEGEVKDDNLNQMLNAVENAPESATRKIGTAYVH NLCKAGNLFTAVRLLQSLCDKNIFLGPSAYNIILVAASEKNDIAILSQVFKDLIVSCQSLPSTSYLKLARGFVKTNDDVQLLRLVKEVSEMTFPSSMMVV NRIIFAFAECGQFDKALLIFKQMENLKCKPDLVTYNTVLDLLGHAGRIDEMLCEFASMKEAGILPDFISYNTLLNQLWKVGRLDLCSVYSRDMVESGIEP DLLTYTALIGSFGQSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKVELAMTLLEEMNASMSNLAGHKDFKRTRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	0	1
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	1.00	0.9077
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	1.73	0.8948
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	2.00	0.8937
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	5.47	0.8911
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	6.00	0.8881
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	6.32	0.8807
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	6.63	0.8799
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	7.14	0.8656
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	7.34	0.8642
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	8.48	0.8821

Compare expression of checked genes

Potri.001G273100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.