Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12200 856 / 0 PYD2 pyrimidine 2 (.1) AT4G04955 72 / 5e-13 ATALN allantoinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067700 [exp] 960 / 0 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.004G041800 [exp] 66 / 3e-11 AT4G04955 669 / 0.0 allantoinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026817 [exp] 865 / 0 AT5G12200 882 / 0.0 pyrimidine 2 (.1) Lus10036064 [exp] 759 / 0 AT5G12200 776 / 0.0 pyrimidine 2 (.1) Lus10025648 [exp] 73 / 2e-13 AT4G04955 716 / 0.0 allantoinase (.1) Lus10018186 [exp] 56 / 7e-08 AT4G04955 648 / 0.0 allantoinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF01979 [poplar] [flax] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G273400.11 pacid=42788214 polypeptide=Potri.001G273400.11.p locus=Potri.001G273400 ID=Potri.001G273400.11.v4.1 annot-version=v4.1 ATGGCTTATCATTTCTCTCTCTCCTTATTACTCTCTCTTCTTCTCTTTACTTATTTTCCTTCAAATTCACAATCCAACCAGTTCTGTGAGGCTGGTATTG GATATGATGAGGTTGGATGTGGAATTTCATCATCATCAACAAAGCTGTTGATCAAGGGAGGAACTGTTGTGAATGCGCACCATCAGGAGATTGCTGATGT TTACGTAAAGGATGGGATTATTGTTGCTGTCAAGCCTAATCTTAGGGTTGGTGACGATGTCAAAGTAATTGATGCTACAGGAAAGTTTGTCATGCCAGGT GGAATTGATCCTCACACACATCTTGCTGTGGAGGCCTTGAACACTGAATCTGTTGATGACTTTTTCAGTGGTCAGGCAGCAGCTTTAGCAGGTGGAACCA CAATGCATATTGACTTTGTTATACCAGTAAATGGCAGTTTAATAGCAGGTTTAAAAGCATATGAGAAAAAGGCAAAGAAATCATGCATGGATTATGGTTT TCATATGGTAATCACTAAATTTGATGACATTGTTTCAAGGGATATGGAAATTATGGTGAAAGAAAAAGGTATCAACTCTTTTAAGTTTTTTCTAGCATAC AAGGGGGTGCTTATGGTCAATGATGAGCTTTTATTAGAAGGATTGAAGAGGTGCAAGTCTCTTGGTGCATTAGCCATGGTACATGCAGAAAATGGAGATG CTGTATTCGAAGGACAGAAAAGAATGATACAGCTTGGTATTACTGGTCCAGAGGGACATGCTCTTTCGAGGCCCCCACTGCTGGAAGGAGAGGCAACTGC TCGAGCAATTCGTTTAGCTGGTTTTGTGAACACGCCACTCTATGTAGTTCATGTTATGAGCATTGATGCCATGGAAGAAATAGCCAAAGCTCGCAAATCA GGGCAGAGAGTTGTTGGTGAGCCAGTGGTTTCTGGATTGGCCCTTGATGATTCAGGACTTTGGGATTCTGACTTCACCACTGCATCAAAGTATGTCATGA GCCCCCCTATAAGAGCATCTGGGCATGGCAAAGCCCTGCAAGATGCCCTTTCAAATGGAGTTCTGCAGCTGGTAGGAACTGATCATTGTGTATTTAATTC CACACAAAAAGCCTCTGGGATTGATGATTTCCGTAAAATTCCTAATGGTGTCAATGGTATTGAGGAGAGGATGCATTTGGTTTGGGATCTGATGGTGGAA TCTGGCCAAATTTCTGTCACTGATTATGTACGGGTCACAAGCACTGAATGTGCCAGGATCTTCAACATATACCCAAGAAAAGGGGCAATTATTGCTGGAT CTGATGCTGATATAATTATACTCAACCCAAACTCAACCTTCGAAATTAATGCAAGGTCTCACCACTCTAGAACAGATACAAATGTTTATGAAGGAAGAAG AGGGAAGGGAAAGGTTGAGGTGACAATTGCTGGCGGACGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGTTCCTGGCTCTGGCAAGTACATAGAAATG GCCCCTTTCAGCTATCTTTTCAGCGGAATTGACAGGGCCGATGCTTCGTACCTATCTTCCCTGAATGCTCCAGTGAAGCGTTTTAAATCCACAACTTAA
AA sequence Show only first row Show all	>Potri.001G273400.11 pacid=42788214 polypeptide=Potri.001G273400.11.p locus=Potri.001G273400 ID=Potri.001G273400.11.v4.1 annot-version=v4.1 MAYHFSLSLLLSLLLFTYFPSNSQSNQFCEAGIGYDEVGCGISSSSTKLLIKGGTVVNAHHQEIADVYVKDGIIVAVKPNLRVGDDVKVIDATGKFVMPG GIDPHTHLAVEALNTESVDDFFSGQAAALAGGTTMHIDFVIPVNGSLIAGLKAYEKKAKKSCMDYGFHMVITKFDDIVSRDMEIMVKEKGINSFKFFLAY KGVLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKS GQRVVGEPVVSGLALDDSGLWDSDFTTASKYVMSPPIRASGHGKALQDALSNGVLQLVGTDHCVFNSTQKASGIDDFRKIPNGVNGIEERMHLVWDLMVE SGQISVTDYVRVTSTECARIFNIYPRKGAIIAGSDADIIILNPNSTFEINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEM APFSYLFSGIDRADASYLSSLNAPVKRFKSTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	0	1
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	3.46	0.8730
AT3G62210		EDA32	embryo sac development arrest ...		Potri.013G003000 [exp]	4.47	0.8121
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	5.09	0.8028	Pt-CNGC.2
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131200 [exp]	6.48	0.8015
AT4G10170			SNARE-like superfamily protein...		Potri.013G094900 [exp]	6.92	0.8437
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	9.21	0.8298
AT4G27020			unknown protein		Potri.011G137700 [exp]	9.48	0.8237
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	13.74	0.7868
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	14.86	0.7951
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	15.19	0.8227	APK1.1

Compare expression of checked genes

Potri.001G273400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.