Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12220 399 / 1e-131 las1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067800 [exp] 938 / 0 AT5G12220 385 / 2e-125 las1-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036063 [exp] 592 / 0 AT5G12220 397 / 9e-131 las1-like family protein (.1.2) Lus10026818 [exp] 582 / 0 AT5G12220 385 / 8e-125 las1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04031 [poplar] [flax] Las1 Las1-like
Representative CDS sequence Show only first row Show all	>Potri.001G273600.2 pacid=42793169 polypeptide=Potri.001G273600.2.p locus=Potri.001G273600 ID=Potri.001G273600.2.v4.1 annot-version=v4.1 ATGGGGTCATTGCTAGGATTCCAAGACGAAACGGTAGCCGTTGTTGATGATGACGAAGAGAAATCAACATCGTCATCTTCATCGTACGGCTACAAATTGG TGCCGTGGTTAAACTGGAACGAGTGGGAATGTGTTAGAGATTCTTTCTTCTCCGAATCTCCAGAAAATATTCTTTCTGCTATTAATAGAATATCTACATG GCGAAGCAGAGGGTGTTTACCTGTTGTGATTGATGTCACAGCTTCGATCATTGAAGTTCAACAGAAGGATCCTTTGTATAGAAAGGACTTACCTGACGAT GCTTTACATTCAGAGCAAATGCTGGCAATGCTATATTGTATGGCTATCTTGAGGCTTGTAAACTGTGTTGTTGAGAAGACACGGAAGAAAACACAGGTTT CAATTGCTGAGGCAGCTGGTGCAATTGGTATTCCACGCACGCTGATCGACATTCGTCATGAGGGTTCTCACCGTGATCTTCCTGCTCTTGCACTTGTTCA GGATTCAGCTGTTAAGGCAATTGATTGGTTGAAATCTTATTATTGGGAACCTCAGACAAAGCAGATTCCATTCCAAAGTGATGGAACTGCTAGCATCAGA AAAGAAATCGAATCTAAACTCCTTGAGTTGGTTTCCTGCTTGAAAGTTAAGAAGAGTCCTGAACCTGGTTCTTCAGCAATCAAAGAAAAACGTTCTAAGA AAAATATTACCAAGACTTTGAAAAATCTTGTACGTCTATATTCTTCCTTCTCCTCAGAAGTACTATCAGTGTTGTTTGAATTCTTGCTCCAGGCTTTAGA TTCCTCAAATCTGGTGGAGCTTACAAAAGGTTGCCTAGTTGGTGAAGACATGAGCTCTTTCTTGGATGATTGGAAGCTTGTAATAACAAAATTCTCAAAG AAGGAACCAGAATTACTCCTTATGCTTCTTAAGGCAGTTCTAAATATGATTGACGCTCAAGAAGCCATGAAATATGAAATGGGAACACACCTCACATCAC GGGCATACAGAACAGAGACTGGCCAAATTGAAAGACTTTCTTCTTTGTTTGCATGGCTTGTTGGACAACTCAAGGGACTAAAGCCTCTCCGCTGCAAAGA AACTGCAGCTGAAAGAAAAGCCTCTTCAATAGGAATGAATTTATCAAACACAATCCTGATGGAGGTCCTCCGCAAATGTCTTTTGGTGTCCTCAAATGGC AATAAGCAGCTTATGGATTCAGCGCTTCATCTTGCACAGTTGATGGGTGATACCTCTGTGATGGGGAAACTCAAAAAACTAAGTTCGCTAGTTTTGTCAG ACCCAGATGTTACCCAAGAAAAGTCTTCTCTCCCAAGTTTGAATAACCTTCTTATCCAGCAAGATGAATCTATCCATCAGGCCACCAAGAAGCTAGAGTT TGTTAAATTTTGCCGAACAAAGAGTAAAGCTGTTAAGAGAACAGATGGTGAAGTAGGTAGTTCAGGCGGATGGGCTGTGGCAAAATCATGGAATCCATGT CCAATTGGCATGTTGCCCCGTGACCTTGGATCTTCCGGCCATCTTCCTGTTCTTGACTGTGCCGATGATGGTAAAAAGCCTGTTCATTCATCAGAATGGA AGCAGTCCTGGGAACTGAAACAAGGCAGCAGTGGTGACATTCGTTTTTCATATGGCGTCGAGAGGACTAGTAGTAAGAGAGAAGCTGGCTGTGATATTTA TTTATTAGATAAATCAAGCGCTAAGAAGATGAGAGAGACAGCTGACAGTTTTGAATCAGATTGCGAGAATGTTTTGTTGTCAGGAGATGACAAAGGTTGT CTGATGATAAATGGAGTTTGGAAGAAAATAGGGGAAGAAGAGCTGCTTACTATTATGTCTGATGTGAGGATTTTGGTGTAG
AA sequence Show only first row Show all	>Potri.001G273600.2 pacid=42793169 polypeptide=Potri.001G273600.2.p locus=Potri.001G273600 ID=Potri.001G273600.2.v4.1 annot-version=v4.1 MGSLLGFQDETVAVVDDDEEKSTSSSSSYGYKLVPWLNWNEWECVRDSFFSESPENILSAINRISTWRSRGCLPVVIDVTASIIEVQQKDPLYRKDLPDD ALHSEQMLAMLYCMAILRLVNCVVEKTRKKTQVSIAEAAGAIGIPRTLIDIRHEGSHRDLPALALVQDSAVKAIDWLKSYYWEPQTKQIPFQSDGTASIR KEIESKLLELVSCLKVKKSPEPGSSAIKEKRSKKNITKTLKNLVRLYSSFSSEVLSVLFEFLLQALDSSNLVELTKGCLVGEDMSSFLDDWKLVITKFSK KEPELLLMLLKAVLNMIDAQEAMKYEMGTHLTSRAYRTETGQIERLSSLFAWLVGQLKGLKPLRCKETAAERKASSIGMNLSNTILMEVLRKCLLVSSNG NKQLMDSALHLAQLMGDTSVMGKLKKLSSLVLSDPDVTQEKSSLPSLNNLLIQQDESIHQATKKLEFVKFCRTKSKAVKRTDGEVGSSGGWAVAKSWNPC PIGMLPRDLGSSGHLPVLDCADDGKKPVHSSEWKQSWELKQGSSGDIRFSYGVERTSSKREAGCDIYLLDKSSAKKMRETADSFESDCENVLLSGDDKGC LMINGVWKKIGEEELLTIMSDVRILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12220			las1-like family protein (.1.2...		Potri.001G273600 [exp]	0	1
AT5G12220			las1-like family protein (.1.2...		Potri.009G067800 [exp]	1.41	0.9179
AT1G15190			Fasciclin-like arabinogalactan...		Potri.001G306800 [exp]	10.39	0.8566
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.003G106800 [exp]	10.81	0.8306	Pt-SWI1.2
AT3G01490			Protein kinase superfamily pro...		Potri.017G072900 [exp]	12.40	0.7976
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	13.74	0.8546
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183799 [exp]	13.85	0.8392
					Potri.005G051150 [exp]	15.42	0.8040
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	16.58	0.8168
					Potri.019G036280 [exp]	16.91	0.8158
					Potri.013G062301 [exp]	16.94	0.7616

Compare expression of checked genes

Potri.001G273600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.