Plant FIBer expression Database

Potri.001G273900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26850 440 / 3e-154 F-box family protein (.1)
AT2G32560 431 / 2e-150 F-box family protein (.1)
AT2G41170 358 / 5e-122 F-box family protein (.1)
AT3G53000 42 / 0.0007 ATPP2-A15 phloem protein 2-A15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G068100
[exp]
687 / 0 AT2G32560 444 / 1e-155 F-box family protein (.1)
Potri.006G040000
[exp]
456 / 1e-160 AT2G26850 374 / 1e-128 F-box family protein (.1)
Potri.016G035900
[exp]
447 / 8e-157 AT2G26850 389 / 2e-134 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036061
[exp]
479 / 6e-169 AT2G32560 445 / 3e-156 F-box family protein (.1)
Lus10036444
[exp]
420 / 1e-145 AT2G26850 391 / 9e-135 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.001G273900.1 pacid=42793425 polypeptide=Potri.001G273900.1.p locus=Potri.001G273900 ID=Potri.001G273900.1.v4.1 annot-version=v4.1
ATGCTACTTTACTTCTTCATTACTTGTTTCTCCTTCGTCCTATTGTTAAAGCCCCTCCCTCTCAAGCCTTTGCCTCCATGGACAAGTGAAATGAGATTGT
TGTCATTCTGGTTCTTGAAGGACTTGCTTCTCTTCTCTTATTTAGGGTCATTAAGGAGTACCCTTTTGAAAGTTTTTCATATCGATAGAATCCCTTTAAA
AATGACAATTAAGAATATGAGCCTAAGTTCAAGTGCAAGAGCAGAAAAAAGTTCTCTTGATGGTGAAGCTGGAGAGATGTCTGTTTTGGACTTGCCTGAA
TTGGCCTTGGAATGCATTCTTGAGAGGTTGCCTCCTGCAGGGCTCTGTAGCATGGCAGGCGTGTGTACTTCTTTGAGGGAAAGGTGTGTGAGTGATCATT
TATGGGAAAAACATATGAAGCAGAAATGGGGCAGGGTTATTGGCCCTGCTGCTTATAGGGAGTGGCAATGGCATTTAGCTTCGAGAAAGGATTTGGGAAG
TTGCAAACAAGGAAAGCCAAAAGGTCTTACGAGGCTTCTGTCAATGTTTTGGCCTTCTTCGTGGAGTACCCCAAAGGCTGATCCTATTAACAATAGCAAG
CAGAGGAGTTCTCTTCCTGTTAATTCAATCATGTCCTGGTACCTTGCTCTTGAGACTGGCAAGTTTTGGTTCCCTGCTCAAGTCTTTAACCGCGAGAATG
GGCACGTCGGATTCATGCTATCATGCTATGATGCTAATCTAAGTTATGATCCAGGGACGGATACATTTCAAGTCAGGTACCCACCACATGGGAGGAGAGC
AATTGCCACAGAGAGTGGTGTGCCATGGGAAAGGCTTAGAGCACCACCTTTTGATACCTCCCCGCATGATCTACATATCTCTGATTGCTTGAATGATTTA
CGCCCTGGAGATCACATTGAGATTCAGTGGAGAAGAAACAAAGAGTTTCCTTATGGTTGGTGGTATGGTGTTGTAGGTCACTTGGAGTTATGTGATGGAA
ATGAAAATTATTGCCGGTGTCATAATAGCGACACTGTAGTGTTGGAGTTCCACCAGTATACTCCTGGCTCACGATGGAGAAGCACAGCGGTCAACAGGAA
AGAGCATAGGGAGGAGGGGGATGAGGCAGATGGATTTTATGGAGGGATCAGAAAACTATACAACAATGAAGAGATTTCCAGGTGGAAGAGGCTTTGGCCG
ACTGAAGTGTTGGAATAG
AA sequence
>Potri.001G273900.1 pacid=42793425 polypeptide=Potri.001G273900.1.p locus=Potri.001G273900 ID=Potri.001G273900.1.v4.1 annot-version=v4.1
MLLYFFITCFSFVLLLKPLPLKPLPPWTSEMRLLSFWFLKDLLLFSYLGSLRSTLLKVFHIDRIPLKMTIKNMSLSSSARAEKSSLDGEAGEMSVLDLPE
LALECILERLPPAGLCSMAGVCTSLRERCVSDHLWEKHMKQKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGLTRLLSMFWPSSWSTPKADPINNSK
QRSSLPVNSIMSWYLALETGKFWFPAQVFNRENGHVGFMLSCYDANLSYDPGTDTFQVRYPPHGRRAIATESGVPWERLRAPPFDTSPHDLHISDCLNDL
RPGDHIEIQWRRNKEFPYGWWYGVVGHLELCDGNENYCRCHNSDTVVLEFHQYTPGSRWRSTAVNRKEHREEGDEADGFYGGIRKLYNNEEISRWKRLWP
TEVLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26850 F-box family protein (.1) Potri.001G273900
[exp]
0 1
Potri.003G038525
[exp]
4.24 0.8789
AT1G01200 ATRAB-A3, AtRAB... ARABIDOPSIS RAB GTPASE HOMOLOG... Potri.002G175700
[exp]
6.92 0.7625
AT3G04530 ATPPCK2, PEPCK2... phosphoenolpyruvate carboxylas... Potri.013G046100
[exp]
6.92 0.8550 Pt-PPCK2.1
AT2G36290 alpha/beta-Hydrolases superfam... Potri.010G237800
[exp]
12.72 0.8284
AT5G46330 FLS2 FLAGELLIN-SENSITIVE 2, Leucine... Potri.011G068500
[exp]
17.46 0.8472
AT4G33180 alpha/beta-Hydrolases superfam... Potri.006G219400
[exp]
18.02 0.7935
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G013800
[exp]
18.76 0.8009
AT2G13350 Calcium-dependent lipid-bindin... Potri.001G458101
[exp]
21.21 0.8148
AT1G23740 AOR alkenal/one oxidoreductase, Ox... Potri.008G161600
[exp]
24.91 0.7895
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G270800
[exp]
26.32 0.8013

Potri.001G273900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.