Plant FIBer expression Database

Potri.001G274000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26530 62 / 2e-10 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G068200
[exp]
491 / 8e-175 AT2G26530 49 / 3e-06 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Potri.009G105400
[exp]
45 / 4e-05 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1)
Potri.002G128500
[exp]
45 / 6e-05 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Potri.004G143500
[exp]
45 / 7e-05 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036060
[exp]
66 / 1e-11 ND /
Lus10026821
[exp]
59 / 2e-09 ND 41 / 0.001
Lus10032766
[exp]
44 / 0.0001 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Lus10019892
[exp]
42 / 0.0004 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1)
Lus10021757
[exp]
41 / 0.001 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07816 DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence
>Potri.001G274000.1 pacid=42791573 polypeptide=Potri.001G274000.1.p locus=Potri.001G274000 ID=Potri.001G274000.1.v4.1 annot-version=v4.1
ATGGCACTTGAAATCTCAAATTGTTGTTTCTTCATGAGTGCACCCACAACTCCAAGTGGATTCAACCTAGACGATAATATGTGTTTCTACAGTGCACCTA
CCAGCCCTACCAAGGGGACCTCCATTGCTACATATGATCTCGAATCCATGCCCACCACACCAAAAACATATGAAGATGCAAATTCCAATCTTGATGACTT
TGAATTCGAAACTAGTCGGCGTTTCAACATCGGCGATATTGATTCGGGAGGTAGTATGAGATATGAAGATGCGATGGAAGAGCAACAAAAGCACCAACAC
AAGGAATCACTTCCTGCCATGGCATTTGCGGATGAATTATTTTGTGATGGTAAGGTGATACCACTAAAGCCTCCACCGTGTCACAATCACAGCTCAACTC
CGACATCCCCTGAGTCCCAAATGGCGAAAATTAAATTCTCTTTTCCACGACGGAATGTGTGGAACGATGATTTTGATCCATTCATGGTAGCTTTAAAGAC
CGTCAAGGGAGAAAGAAAGGAAAAATGGCAGAAAATCAACCATACACGGGCCCGGTCCATGTCGCCTATACGAGCCAGAAGTGAATTGATGGACTGCACG
CATAAGCAGTGCAAGCAATTGGATCGTATCAGGCCGGATCTGAATAATCAACTGGAGCTCAATGGGTTGCCTACTCGCATATGGATTCCAAATGTAACAA
ATGCTAGTCCAAATAGGCTAGCTGAGTCCAAAGGAGTTCTGTTTGCAAGAAAAGCTAGATTGATGAAAATAGACCTAGAGTGGCCACGAAAGCCCAATAA
GACAACTCTTCAAGAGTCCATGCTGAAGGCTGGAAAGAACGCCAAAGAAAAGGGAGAGCCTAGTGAGAGAAAAAGCAAGAGGCAGAGTATGAAAAACTTT
CTGTATAGGAGTTTATCTACGAGGAGAAATGATGAGGATAGAAAGCAAACAGAACAGACTGTTGAAGTTGCAAAGCCAGAAACTAAGAGGAAGTTAAGCT
TTAAGTCCATGGGGTTAGTTGTCCGCAATGGGGAGAAAGGAGGGTCTCAGATCACCAAGGTAACACAGACACGTTATAAGCCAAAGCTGTCTCTGTGCAT
GGGCAATGGAGCAAAATATGTTGAATGA
AA sequence
>Potri.001G274000.1 pacid=42791573 polypeptide=Potri.001G274000.1.p locus=Potri.001G274000 ID=Potri.001G274000.1.v4.1 annot-version=v4.1
MALEISNCCFFMSAPTTPSGFNLDDNMCFYSAPTSPTKGTSIATYDLESMPTTPKTYEDANSNLDDFEFETSRRFNIGDIDSGGSMRYEDAMEEQQKHQH
KESLPAMAFADELFCDGKVIPLKPPPCHNHSSTPTSPESQMAKIKFSFPRRNVWNDDFDPFMVALKTVKGERKEKWQKINHTRARSMSPIRARSELMDCT
HKQCKQLDRIRPDLNNQLELNGLPTRIWIPNVTNASPNRLAESKGVLFARKARLMKIDLEWPRKPNKTTLQESMLKAGKNAKEKGEPSERKSKRQSMKNF
LYRSLSTRRNDEDRKQTEQTVEVAKPETKRKLSFKSMGLVVRNGEKGGSQITKVTQTRYKPKLSLCMGNGAKYVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26530 AR781 Protein of unknown function (D... Potri.001G274000
[exp]
0 1
AT1G67025 unknown protein Potri.017G117230
[exp]
3.87 0.9539
AT2G02955 MEE12 maternal effect embryo arrest ... Potri.010G169500
[exp]
12.60 0.9232
AT1G16770 unknown protein Potri.004G169900
[exp]
14.07 0.9524
AT1G03150 Acyl-CoA N-acyltransferases (N... Potri.002G052000
[exp]
14.96 0.9209
AT1G10280 Core-2/I-branching beta-1,6-N-... Potri.004G228100
[exp]
15.19 0.9356
AT1G61150 LisH and RanBPM domains contai... Potri.004G037600
[exp]
15.29 0.9086
Potri.003G152950
[exp]
16.34 0.8987
AT3G48480 Cysteine proteinases superfami... Potri.015G090800
[exp]
18.65 0.9192
Potri.012G007866
[exp]
21.93 0.9469
AT3G20800 Cell differentiation, Rcd1-lik... Potri.011G086800
[exp]
22.13 0.9120

Potri.001G274000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.