Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26780 2389 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036052 [exp] 2348 / 0 AT2G26780 2004 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G274500.5 pacid=42788583 polypeptide=Potri.001G274500.5.p locus=Potri.001G274500 ID=Potri.001G274500.5.v4.1 annot-version=v4.1 ATGGCAGAATCGTCGTCTTCGTCTTCGTCACCAGTAGTAAAATCAGATGCGGAAACAGAAGAATTACTGGATCGAATGTTAACTCGGCTTGCTTTATGCG ACGACTCGAAGCTTGAAACTTTACTGTCTAAGATTCTCCCTCTCACTATCTCGTCACTTTCCTCAAACTCCACCGCCGTCCGCAACAAGGTTCTTGAAAT TTTGAGTCATGTCAACAAGAGAGTGAAATATCAACATGAGATTGGTTTGCCATTACAAGAGTTATGGAAACTGTATACCGAAGCCAATGCCACTGCAATT GTCAAGAACTTTTGCATCGTGTATATTGAGATGGCATTTGAACGGGTAAATATAAAGGAAAAGGAAAATATGGCACCTGTGCTTGTTGCTAACATCTCTA AACTTCCTCTTCAACATCAAGAGATTATCTTGAGAATTGTTACTAAGGTGATTGGTGAATGTCATGCTAGTGGGATCGATGAAGAAGTTGCTGTAAAGTA TAGATCAGTGAATGGCTCTCAGGACAGAGAATTATTTGCTGAGTTCTGCCTTCATTTAATGTTATACAAGCAGTCATCTCAAGGAGGAGGATGCTCACCT GGGCTTTCAATTGCTCAAAGCAATCGTGTTGCAGGAAAGAATCCCTTAAAAAATGAAGAACTTCTGATGAGAAAGTTAGGGGTTTTGAATGTTGTTGACG CCATGGAGCTGGGTCCAGAACCTGTTTATCCCCTATATCTGGTTGCTAGCGCAGATAGTCAAGAGGCAGTTATTAAGAAGGGGGAGGAGCTCCTGAGGAA GAAGGCAGCGAGTGCTAATTTAGATGATTCAAACTTGATGAACAAACTGTTTTTACTATTCAATGGTACTACTAGCACTGGAAATGTCGCTCCAGAATCT AAAGTCAACCCAGCAAGTGTTTCTTTGAAAACAAAGCTGATGTCTGTATTTTGCCGGTCTATTACTGCTGCAAACAGTTTCCCAGCAACTCTGCAGTGTA TTTTTGGTTGCATATATGGAAGTGGTACCACCTCAAGGTTGAAGCAATTGGGAATGGAATTCACTGTTTGGGTGTTTAAGCATGCAAAAAGTGATCAGCT GAAGCTCATGGGCCCTGTTATACTGACTGGGATTCTGAAGTTACTTGATAGTTATTCAAGCTCAGAATCAGATGCTATTGCTAGGGACACCAAAACATTT TCTTTTCAAGCAATTGGATTACTTGGGCAGCGCCTTCCCCATCTCTTTAGAGACAAGATTGATATGGCTGTTCGTCTTTTTGATGCATTGAAAGCTGAAG CTGAATCTCTTCGTTTTGTTATCCAAGAAGCAACCAATTCTCTTGCTGCTGCATACAAGGGAGCACCAGCTACTGTATTGATGGACCTGGAGACTCTTCT TCTGAATAATTTTCAAGCAGAACAAAATGAAGTACGTTTGTGTGCCGTGAGATGGGCAACATCTTTATTTGATTTGAAGCATTGTCCAAGTAGATTTATA TGCATGCTTGGTGTGGCAGATTCTAGGTTGGATATAAGGGAAATGGCACTTGAAGGCCTGTTTCTTGACAAAGACATGGGTCGAAGTAGAAGACAGAATA TTGATTTTATATACCCAAAACTTGGAGAGATGTTGGATTATATTGTTAAGCAGCAGCCAAAATTGTTAGAGTCAAGTGAAATGAGGGAACAAAAGCTTCT TTTTTCATCTAAAATGTATGTGGCTATGATCAATTTTTTGTTGAAGTGTTTTGAGTCAGAGTTGGACCAAAACAACTCTTTAGGGAGATCAACTGAATTT CTGTCTTCAGTGGAAACAATGTGCTTACTGCTAGAACATGCTATGGCATATGAAGGCTCTGTTGAATTGCATGCCACTGCTTCCAAGGCATTAATTACAA TTGGATCTTATCTTCCAGAGATGATCGCATCACACTATGTGCCTAGAATATCATGGCTAAAACAATTACTGAGTCATGTAGACTTAGATACTCGTGAATC TGCAGCACGCCTACTTGGCATAGCTTGCTCTGCTATTCCTCCCGCCACATCATCAGATCTAATTTCTGAGCTACTCTCTGCAATTTCTAAAACAAGCAAT TTAAGGTTTGAGGCACTTCATGGAATACTGTGTGCAATTGGATATGCTACTGCAGAGTGTATGTCTATAGCGGTTGCTATCCCAGGGACATTGTTTCAGA AAATACTTAAATGCCTGACTGATATTGCTAATTCTGAGACCGCAACATTGGCCTCTATTGCTATGCAAGCTCTGGGTCATATTGGATTACGTGCACCATT ACCTCCTCTTGTTGATGACTCTAGTTCAGGTGTTGACATTCTGATACTCTTAAATGAAAAGTTGAGCAAGCTACTCTCCGGTGATGACAATAAAGCAATT CAGAAAATCGTTATCTCCCTTGGACACATCTGTGTAAAGGAAACGTCACCTTCACTCCTGAATATTGCCCTTGATTTGATTTTTAGTCTCTGTCGATCAA AGGTTGAGGATGTCCTGTTTGCTGCTGGGGAGGCTCTGTCATTTTTGTGGGGTGGCATTCCTGTTACAGCTGATGTGATTCTCAAAACTAACTATTCTTC ACTTTCAATGACTTCAAATTTTCTTCTGGGGGACATAAGCTTATCTTTGTCAAAATACAACCCTAATGAGAAATGTGAAGCTAATGAAGATTACCACGCC ACCATTAGAGATTCAATTACTAGAAAACTCTTTGAGACTCTTTTATACAGTAGCAGAAAAGAAGAACGCTGTGCTGGAACTGTTTGGCTACTATCACTGA CAATGTATTGTGGTCGTCACCCGACCATCCAACAAATGCTTCCACAAATTCAGGAGGCTTTTTCACACTTGCTTGGTGAACAGAATGAACTTACACAAGA GCTAGCATCACAAGGTATGAGTATTGTCTATGAACTTGGTGATGCAGCAATGAAGAAAACTTTAGTAGATGCACTTGTAACAACTTTGACGGGTTCAGGA AAGAGGAAAAGAGCTATCAAGCTGGTAGAAGACTCTGAAGTTTTCCAAGAGGGGACTATTGGTGAAAGTCTGAGTGGAGGGAAACTTAGCACTTATAAGG AGCTATGCAGTCTAGCAAATGAGATGGGCCAACCAGACATGATTTATAAATTTATGGATCTGGCTAATCATCAAGCTTCTCTAAATTCCAAGAGGGGTGC TGCTTTTGGATTTTCCAAGATAGCCAAACAAGCTGGAGATGCCCTCCAACCACACTTACAACTATTGATTCCACGGCTAGTTAGATACCAATACGATCCT GATAAGAATGTGCAGGATGCAATGGCTCACATATGGAAGTCATTAGTTGCAGATCCAAAGAGAACTATTGATCAACATCTTGACTTGATTGTTGATGATT TAATAATTCAATGTGGATCTAGGCTTTGGCGTTCACGTGAGGCTTCCTGTCTTGCCCTTGCAGATATTATTCAAGGGAGAAAATTCAAACAGGTTGGAAA GCATTTGAAGAAAATATGGACAGCAGCATTCCGTGCCATGGATGATATAAAGGAGACTGTCCGAAATGCTGGAGACAGATTATGCCGTGCTATTTCTTCA TTAACAATACGGCTATGCGATATTTCACTTACTGAAGTATCAGACGCCAGAGAAGCAATGGGGATTGTTCTGCCTCTGTTGCTTGCTGATGGGATTTTAA GTAAAGTTGACAGTATTCGCAAGGCATCAATCGGTGTTGTTATGAAGCTTGCAAAGGGTGCAGGGATTGCACTTCGTCCACATTTGTCTGATTTAGTTTG TTGCATGCTGGAAAGTTTGTCAAGCCTTGAAGACCAAGGTCTCAATTATGTTGAGTTGCATGCAGAAAATGTTGGAATACAGTCAGAGAAGCTTGAGAAT TTGCGGATTTCAATTGCGAAAAGCTCTCCTATGTGGGAAACTCTTGACCTATGCATAAATGTTATAAATACTGAATCCTTAAATCTCTTGGTTCCTCGCC TTGCTCATTTGGTTCGATCAGGTGTTGGACTCAACACCAGGGTTGGTGTGGCCAGCTTTATCAGCTTATTGATTCCAAAAGTTGGAGCAGATGTAAAGCC ATTTACAAGCATATTATTGAGGGTGTTGTTTCCAGTAGTTAAGGAGGAGAAAAGTGCTGCTGCAAAGCGTGCTTTTGCAAGCGCTTGTGCCGTGGTTCTG AAGCATGCTGGTCATTCCCAGGCCCAAAAGTTAATTGAAGACACTGCAGCTTTGCATACTGGGGAAAAGAATGCTCAAATTTCATGTGCAATTCTTTTGA AAAGTTATTATTCTGTGGCATCTGATGTTCTGAGTGGATATCATGCAGTAATATTTCCAGTTATATTTATTTCAAGATTTGAAGATGACAAGAATATTTC TGGCCTATTTGAGGAGCTGTGGGAAGACAGTACAAGTGGTGAACGGGTCACCATTCATTTGTATTTAGGAGAAATTGTTTCTCTTATTTGTGAAGGCCTT GCATCATCATCATGGACAAGTAAAAGAAAGTCAGCCCAGGCAATTTGCAAGCTTAGTGAAGTTATGGGTGAATCATTGTCTTCTTATCACCATGTTCTGC TCGATTCTGTTATGAAAGAACTTCCTGGTCGTTTATGGGAGGGTAAGGAGTCCCTCCTAAATGCAATAGGTGCACTTTCTTCATCCTGCCATAAAGCAAT TTCCTCTGAAAATCCTGTCACCTCTGATGCTATTTTGAATATGGTATCTTCCGCATGCACGAAAAAGGTGAAGAAATACCGTGAAGCAGCTTTCTCTTCT CTTGACCAGGTTATAAAAGCTTTTGGTGATCCGAAGTTCTTTAATGTGATTTTTCCTCTATTATTTGGGATGTGCGACTCTACTGCTGCCAATAAATCTG GGTCAGCATTGGCAAGTGATGCTGCTAAAACAGATAATGTGGACCCTGCTGTGCCACTTGAAAAGATTCTTGGCTGCGTGATGTCTTGCATCCACGTGGC ACATTTAAATGATATTTTTGAACAGAAAAAGAACTTGATGGACCTGCTCTTGATCTCTCTCTCGCCTGGGTTTCAGTGGACAGTCAAATTGTCGGCATTT TCATTAATTAAAGAACTTTGCTCGAGGCTACAGAGCATCCTGGTGGAGGCTTCTAAGGGAGCCTCTCAGCATGATAGCGCAACTTCTTTTGTTCAGGAGC TGTTCTATTCTGTATCACCAAAGATAGTTGAATGTATAAGCACGATAAAGATTGCTCAGGTTCACATAAGTGCTTCAGAGTGCCTTCTGGAGGTCACAGG TCTTGCATCAGTGCGCTGGACAGATGTAGGGTTCAAGGAAGAGCTTCTTCATCAGTATGAAGTGGAGAAGAATGAGGAGGCAAAATCATATTTGAAAAAA TGCATTGACATCTTTGAAAATCTAGAATGA
AA sequence Show only first row Show all	>Potri.001G274500.5 pacid=42788583 polypeptide=Potri.001G274500.5.p locus=Potri.001G274500 ID=Potri.001G274500.5.v4.1 annot-version=v4.1 MAESSSSSSSPVVKSDAETEELLDRMLTRLALCDDSKLETLLSKILPLTISSLSSNSTAVRNKVLEILSHVNKRVKYQHEIGLPLQELWKLYTEANATAI VKNFCIVYIEMAFERVNIKEKENMAPVLVANISKLPLQHQEIILRIVTKVIGECHASGIDEEVAVKYRSVNGSQDRELFAEFCLHLMLYKQSSQGGGCSP GLSIAQSNRVAGKNPLKNEELLMRKLGVLNVVDAMELGPEPVYPLYLVASADSQEAVIKKGEELLRKKAASANLDDSNLMNKLFLLFNGTTSTGNVAPES KVNPASVSLKTKLMSVFCRSITAANSFPATLQCIFGCIYGSGTTSRLKQLGMEFTVWVFKHAKSDQLKLMGPVILTGILKLLDSYSSSESDAIARDTKTF SFQAIGLLGQRLPHLFRDKIDMAVRLFDALKAEAESLRFVIQEATNSLAAAYKGAPATVLMDLETLLLNNFQAEQNEVRLCAVRWATSLFDLKHCPSRFI CMLGVADSRLDIREMALEGLFLDKDMGRSRRQNIDFIYPKLGEMLDYIVKQQPKLLESSEMREQKLLFSSKMYVAMINFLLKCFESELDQNNSLGRSTEF LSSVETMCLLLEHAMAYEGSVELHATASKALITIGSYLPEMIASHYVPRISWLKQLLSHVDLDTRESAARLLGIACSAIPPATSSDLISELLSAISKTSN LRFEALHGILCAIGYATAECMSIAVAIPGTLFQKILKCLTDIANSETATLASIAMQALGHIGLRAPLPPLVDDSSSGVDILILLNEKLSKLLSGDDNKAI QKIVISLGHICVKETSPSLLNIALDLIFSLCRSKVEDVLFAAGEALSFLWGGIPVTADVILKTNYSSLSMTSNFLLGDISLSLSKYNPNEKCEANEDYHA TIRDSITRKLFETLLYSSRKEERCAGTVWLLSLTMYCGRHPTIQQMLPQIQEAFSHLLGEQNELTQELASQGMSIVYELGDAAMKKTLVDALVTTLTGSG KRKRAIKLVEDSEVFQEGTIGESLSGGKLSTYKELCSLANEMGQPDMIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALQPHLQLLIPRLVRYQYDP DKNVQDAMAHIWKSLVADPKRTIDQHLDLIVDDLIIQCGSRLWRSREASCLALADIIQGRKFKQVGKHLKKIWTAAFRAMDDIKETVRNAGDRLCRAISS LTIRLCDISLTEVSDAREAMGIVLPLLLADGILSKVDSIRKASIGVVMKLAKGAGIALRPHLSDLVCCMLESLSSLEDQGLNYVELHAENVGIQSEKLEN LRISIAKSSPMWETLDLCINVINTESLNLLVPRLAHLVRSGVGLNTRVGVASFISLLIPKVGADVKPFTSILLRVLFPVVKEEKSAAAKRAFASACAVVL KHAGHSQAQKLIEDTAALHTGEKNAQISCAILLKSYYSVASDVLSGYHAVIFPVIFISRFEDDKNISGLFEELWEDSTSGERVTIHLYLGEIVSLICEGL ASSSWTSKRKSAQAICKLSEVMGESLSSYHHVLLDSVMKELPGRLWEGKESLLNAIGALSSSCHKAISSENPVTSDAILNMVSSACTKKVKKYREAAFSS LDQVIKAFGDPKFFNVIFPLLFGMCDSTAANKSGSALASDAAKTDNVDPAVPLEKILGCVMSCIHVAHLNDIFEQKKNLMDLLLISLSPGFQWTVKLSAF SLIKELCSRLQSILVEASKGASQHDSATSFVQELFYSVSPKIVECISTIKIAQVHISASECLLEVTGLASVRWTDVGFKEELLHQYEVEKNEEAKSYLKK CIDIFENLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	0	1
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	4.00	0.8483
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.002G110500 [exp]	4.89	0.8217
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	5.83	0.7561
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	5.91	0.8204
AT1G02080			transcription regulators (.1.2...		Potri.014G058800 [exp]	6.63	0.8212
AT1G58230			binding (.1)		Potri.002G111000 [exp]	10.39	0.8195
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	10.39	0.7716	Pt-UBP12.2
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	10.77	0.8363
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	10.81	0.8136
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	13.41	0.8001	RAD50.1

Compare expression of checked genes

Potri.001G274500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.