Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	F3'5'H2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 488 / 3e-169 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 342 / 3e-112 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 340 / 2e-111 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G12300 335 / 2e-109 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 329 / 4e-107 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT2G45570 327 / 1e-106 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33720 322 / 2e-104 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT3G26300 315 / 5e-102 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 313 / 5e-101 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT1G01280 313 / 5e-101 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069100 [exp] 911 / 0 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 460 / 3e-158 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 370 / 2e-123 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 370 / 5e-123 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 370 / 1e-122 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 365 / 2e-121 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 361 / 5e-120 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G040200 [exp] 361 / 1e-119 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 357 / 5e-118 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 483 / 2e-167 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 446 / 1e-152 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 361 / 1e-119 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10017742 [exp] 350 / 3e-115 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 349 / 5e-115 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008918 [exp] 345 / 8e-114 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 340 / 2e-111 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 339 / 3e-111 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 338 / 6e-111 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 338 / 7e-111 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G274600.1 pacid=42790275 polypeptide=Potri.001G274600.1.p locus=Potri.001G274600 ID=Potri.001G274600.1.v4.1 annot-version=v4.1 ATGGACGTAGACCCAGTCCTCCCTGGGAAACTTACCTTGGCAGCTCTCTTATTCTTTATCAGCTACCAATTTACTGGCTCTTTCATCAGAAAATTGTTGC ATCGATACCCCCCGGGACCTCGAGGTTGGCCGATCATTGGTGCAATTCCCCTCCTAGGAGACATGCCTCATGTCACATTAGCCAAAATGGCCAAGAAGCA TGGTCCCGTCATGTACCTGAAAATGGGTACTCGTGACATGGTTGTGGCCTCCAACCCAGATGCAGCCCGAGCCTTCCTCAAAACCCTTGACCTAAATTTC TCAAACCGTCCCATAGATGGAGGTCCAACTCACTTAGCTTATAATGCACAAGACATGGTCTTCGCAGATTACGGACCAAGGTGGAAATTGTTGCGCAAAT TAAGTAACCTGCACATGCTAGGTGGTAAAGCTCTAGAGGATTGGGCTCCTGTCCGAGTAACCGAGCTAGGTCACATGCTCCGAGCCATGTGCGAGGCTAG CCGAAAAGGAGATCATGTGGTGGTGCCAGAAATGTTGACCTATGCAATGGCAAATATGATAGGACAAATTATACTTAGTCGTCGTGTGTTTGTTACAAAG GGCTCAGAGTCTAATGAGTTCAAGGATATGGTGGTGGAGCTAATGACAAGCGCGGGGTTTTTCAATATTGGAGATTTTATACCGTCTGTTGCTTGGATGG ATTTGCAAGGAATTGAACGTGGGATGAAGAAATTACATAGAAGGTTTGATGTGTTACTGACGAAAATGATTGAGGATCATTCGGCAACCAGTCATGAACG CAAGGGAAAGCCGGATTTTCTTGACGTTCTAATGGCCAACCAAGAAAATTCGGATGGTGCGAGGCTTTGTCTTACCAACATTAAGGCTCTTCTCTTGGAC TTATTCACAGCTGGTACCGACACCTCCTCGAGCGTAATTGAATGGGCACTTGCCGAGATGTTGAAAAACCAGAGCATCCTTAAAATGGCTCAAGAAGAGA TGGATCAAGTCATCGGTCGGAATCGACGGCTAGTTGAATCTGACATACCAAAACTTCCATACCTGCAAGCCGTATGCAAAGAAACATTTCGAAAACACCC ATCAACGCCTCTAAACCTCCCCAGGATTGCAGACCAAGCATGTGAAGTGAATGGATATTATATCCCTAAAGGCGCTAGACTCAGTGTTAACATTTGGGCT ATAGGGAGGGACCCAGATGTGTGGGATAATCCAGAGGTCTTTACTCCTGAGAGATTCTTTACTGAAAAATATGCAAAAATTAATCCACGGGGAAATGATT TTGAGCTAATTCCGTTTGGAGCAGGGAGAAGAATTTGTGCTGGGGCTAGAATGGGAATTGTGCTGGTGGAGTACATTTTAGGCACGTTGGTGCACTCTTT TGATTGGAAATTGCCGGAGGATGTTGATCTCAACATGGACGAGGTCTTCGGCCTTGCATTGCAGAAGGCTGTCCCTCTCTCCGCTATGGTTAGCCCACGC CTAGAACCTAATGCATATCTTGCCTAA
AA sequence Show only first row Show all	>Potri.001G274600.1 pacid=42790275 polypeptide=Potri.001G274600.1.p locus=Potri.001G274600 ID=Potri.001G274600.1.v4.1 annot-version=v4.1 MDVDPVLPGKLTLAALLFFISYQFTGSFIRKLLHRYPPGPRGWPIIGAIPLLGDMPHVTLAKMAKKHGPVMYLKMGTRDMVVASNPDAARAFLKTLDLNF SNRPIDGGPTHLAYNAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWAPVRVTELGHMLRAMCEASRKGDHVVVPEMLTYAMANMIGQIILSRRVFVTK GSESNEFKDMVVELMTSAGFFNIGDFIPSVAWMDLQGIERGMKKLHRRFDVLLTKMIEDHSATSHERKGKPDFLDVLMANQENSDGARLCLTNIKALLLD LFTAGTDTSSSVIEWALAEMLKNQSILKMAQEEMDQVIGRNRRLVESDIPKLPYLQAVCKETFRKHPSTPLNLPRIADQACEVNGYYIPKGARLSVNIWA IGRDPDVWDNPEVFTPERFFTEKYAKINPRGNDFELIPFGAGRRICAGARMGIVLVEYILGTLVHSFDWKLPEDVDLNMDEVFGLALQKAVPLSAMVSPR LEPNAYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G274600 [exp]	0	1	F3'5'H2
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	12.80	0.7375	Pt-PRX1.15
AT2G03630			unknown protein		Potri.008G096300 [exp]	74.67	0.6645
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	82.26	0.6793
AT1G62420			Protein of unknown function (D...		Potri.004G001400 [exp]	98.49	0.6616
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.005G067200 [exp]	99.57	0.6661
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	113.36	0.6461
AT2G01260			Protein of unknown function (D...		Potri.019G119100 [exp]	114.07	0.6397
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	114.92	0.6602
					Potri.003G204425 [exp]	121.97	0.6564
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	138.20	0.6321

Compare expression of checked genes

Potri.001G274600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.