Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 1857 / 0 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G32250 142 / 1e-34 Protein kinase superfamily protein (.1.2.3) AT2G31800 80 / 4e-15 Integrin-linked protein kinase family (.1) AT3G58760 76 / 8e-14 Integrin-linked protein kinase family (.1) AT4G18950 76 / 8e-14 Integrin-linked protein kinase family (.1) AT2G43850 76 / 1e-13 Integrin-linked protein kinase family (.1.2) AT5G66850 73 / 1e-12 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G59830 72 / 2e-12 Integrin-linked protein kinase family (.1) AT1G63700 71 / 7e-12 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT3G46930 69 / 1e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029600 [exp] 1943 / 0 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.006G255700 [exp] 139 / 2e-33 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G026400 [exp] 138 / 5e-33 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G062000 [exp] 85 / 2e-16 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.017G007800 [exp] 84 / 4e-16 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.008G195800 [exp] 78 / 5e-14 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.010G031800 [exp] 77 / 1e-13 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.005G082200 [exp] 72 / 2e-12 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179100 [exp] 71 / 3e-12 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039491 [exp] 1895 / 0 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10024136 [exp] 1746 / 0 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001499 [exp] 128 / 6e-30 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 122 / 4e-28 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 121 / 9e-28 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 120 / 2e-27 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10024135 [exp] 106 / 6e-25 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10012799 [exp] 77 / 8e-14 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033979 [exp] 77 / 9e-14 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10021766 [exp] 74 / 9e-13 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G274900.2 pacid=42790700 polypeptide=Potri.001G274900.2.p locus=Potri.001G274900 ID=Potri.001G274900.2.v4.1 annot-version=v4.1 ATGGCCGATACCAGAAGCCGAAACGGCAAAAAGATTCCGATACCGAAGTGCCCAATCTGCCAAACAGTTTACAACGATCACTCTCACACGCCTCTGCTTC TCCAGTGCGGCCACTCTTTCTGTCTCAATTGTCTCTCTCGCCTCCTCCTCTCTTCCTCACCTTGTAAACCATCACAAAAATCCTCACTTACCTGTCCTAA ATGCCGCCACGTCTCCCCTCTCGGCAACTCCCTCCTCTTCCTCCCTAAAAACTTCTCTCTCCTCTCTTCCCTCCTTCCCTCCTCCTCCGCCTCCGACTCC GACTCCGACTCCTCCGACGACGAGAGCGATGTCAATCCTCGTCGATTTCATTGTTCTACAACAAGCGGCGTCGGATTGGCTGGGAATTTGTGTAGAGATC ATGAATTGAGGATTGTGAAGGGGATTAGTGAGGTGAAGTGGAGCGGTTTGTTGGTGAAGGGGAAGGAGTGTAAGCATAAGGTAGTTGTGAGGAGAGTTAG GGTTGATGACGTGGCCGATGGTAATTGGGTGGAGAAGGAGCTGGATAATTTGAGGAGGAAAGTTATGTGGTGTAGAAATGTGTGTGGATTTTATGGTGTA GTGAAGAGTGGAGAGGATGATTTGTGTGTTGTGATGGAAAAATGTTTTGGTTCTGTTAAGGAACAGATGGAAGGGAATGGCGGCCGCCTCTCTCTCGATC AAATCTTAAGGTATGGAGCTGACATTGCACGGGGGGTAATTGAAATTCATGCTGCGGGTATTGTGTGCCTGAACTTAAAGCCGTCCAATTTTCTTCTTGA TGCAAGTGGTCATGTGGTGGTTTCTGATTATGGACTTCCGATGATTCTTAAGAAAACTTCTTGCTCAAAGGGTCTGCTTGTGCCTGAGGCTGATCCATTA AAAACACATTGGTGTATTGATTGTTTGTCGCTAAGTCCATATTATTCAGCTCCAGAGGCATGGGAGCCATTAAAGAAATCTTTGCACTTATTCAGGGATG GTAACATTGGCATATCTGCAAAATCAGATTCCTGGAGTTTTGGTTGTGCTCTCGTCGAAATGTGCACTGGCTTCACTCCGTGGGCTGGTCTAAGTGCAGA AGAGATCTACCATGCTGTTGTTAAGGAAGGAAGATCACCTCCACAATATGAAAAAGTTGTAGGTCATGGGATTCCTACAGAACTATGGAAGATGATTGGC GAGTGCCTACAATTTAAGGCATCGAACAGACCCACATTTCATGCAATGCTCGCCGTATTTCTGCGTCATTTGCAAGGAATACCTCGAAGTCCTGCAATTC CTAATACAGAACCTGCAAACTGTTCCAGAATTGATATGCTGGAACAATCTCCGACATCCGTCCTGGACATTTTCCCAGTCAAAAGCAACCATCTGCATCA ACTTTTATCTGACGGGGACGTGGATGGTGTCAGAGATCTTCTTGCCAAGTCTGCATCGGGTAACGATGGCAACTCAGTTATTTCTCTGCTTGAAGCACAT AATGCTGATGGTCAAACTGCATTGCACTTGGCTTGTAGACGGGGTTGCCTTAAACTTGTTGGTGCCATTTTGGAGTACAGCGATGTGGATGTGGATATTC ATGACAAAGATGGTAATCCACCAATAGTGTTTGCTTTAGCAGCTGGATCCCCAGAATGTGTAAGATCTCTTATCAGAAGATCAGATTATGCAACTTGTAG GATGAGCGAAAGCATTGGCCGGTCAGTAGCTCATGTCTGTGCATATTATGGGCAACCAGACTGCATGTTGGAATTACTTTTGGCTGGTGCTGATGCCAAT GCAGTGGATGATGATGGTGAATCTGTACTGCATGTAGCCATCACCAACAAACATACAGAATGTGCTATTGTCATATTGGAAAATAGTGGATGCAGATCAA TGAGTTTTCTGAACTCAAAAAATATGACACCCCTACATTTGTGCATAGAAGCTCTAAATGTGACTGTTGTCAAGAGGTGGCTAGAAGTTGCATCAGAAGA AGAAATCGCTGGAGCCATTGACCTGCCCAGTTCAGTTGGAACTGCATTATGTATGGCAGCTGCTTTAAGAAAAGATCACGAGACAGAGGGCAGAGAGCTG GTGAGATTACTTCTTGCTGCTGGAGCAAACCCTGCTGCCCAAGATGCTGAAAATCATCAAACAGCTTTGCATACAGCTTCGGCAGCAAATGATGTTGAGT TGGTCAAGATCATTCTTGATGCTGGAGTGAATGCTAACCTACGAAATGTGCATGGTACAATACCTCTTCATTTAGCATTGGCTAAAGGTGCAAAGCCTTG CGTCGAATTGCTCTTGGCTGCTGGTGCAGATTGTAATTTGCAGGATGAGGATGGTGACAATGCCTTCCATATAGCTGCTGCGGCTGCAAGGTTGATACGT GAGAATCTTGACTGTATCATCCTTATGCTGCAGTGCCCAAATGCAAGCATTAAAATTAGAAACAACAGTGGTAAGACGTTGTGTGACCTCCTGGAGAGCC TGCCCCGAGAATGGATTTCAGAAGAGCTTTTGGAAGCACTAGCTAATAAGGGAGTTTCTTTATACCCAACAGTGTTTGAAGTTGGAGATTGGGTAAAATT CAAGAGGGGCATGAAGAATCCAACATATGGGTGGCAAGGTGCAACGTGTGGCAGTGTTGGTTTTGTACAGAGTATTCCAGAGAATGGCAGTCTTACTGTA TCATTTTGCACAGGAGTTGCTCATGTCTTGGCAAATGAAGTTGTAAAAGTGATTCCTTTTGACAGTGGCCAACTTGTGCAACTTAAACCTGATGTTATAG AGCCCAGATATGCGTTGCATGAACAATTACGTCACAGTCAGGGAACTGTTCTGTGCATTGAGGATGAGGGGTTTATACGAATTGGTTTTCGCGGTGCCTC TAAGGGGTGGCAAGCTGATCCTGCAGATTTTCAAAGATTTGAAGAATTCAAGGTTGGTGATTGGGTTTGTGTTCGCAAAACACCTGAGGCTGTAAAGCAC GATTTTGGAATTGTGACTGCTGGAAGCATAGGGATCGTGCATGGTATCAGATCCGATAGTAGTTTGTTGATAGAGTTCAGTTGTGTACCTGCTCCATGCA TATTTGAACCAGAGGAGGTTGAACCAGTTGTGCCTTTTAAGATAGGTGAGCTAGTATGTGTGAAACGATCTATTGCAGAGCCCAGCTTTGCTTGGGGTGG TGAGACACATCATAGTGTTGGAAGAATATTTGACATAAAGAGTAATGGTCTTCTGATAATCGAAATACAAAATCGGTCCATACCATGGACGGCTGATCCT TCAGATATGGAAAAGGTGGAGGACTTCAAGGTTGGTGACTGGGTTAGAGTAAAAGCTTCGGTACCCTCTCCAAAATATGGGTGGGATGATGTCACCAGGA CTAGCATTGGTATTGTCCATAACTTAGAGGATGATGGTGACATGGGTGTTGCTTTCTCCTTTAGAAGCAGGCCCTTTCTATGTTCAATGACAGACATGGA GAAGGTGTCACCTTTCAAAGTGGGACAAGAGATCCGTGTCATGCCGTCTATCACTCAGCCATTGCTTGGATGGTCAAATGAAAGTCCAGCTACTTTTGGG ACTGTTGCGAGGATTGACATGGATGGAACCCTCAATGTGAGAGTGGCTCGTAGAGCAAGCTTATGGAAAGTTGCTCCAGGTGATGCTGAAAGGCTCTCAG GACTCGCTGTTGGTGACTGGGTTAGGGTGAAGCAATGTCTGGGGTCTAGACCAAGTTATGAGTGGAACAGTTTTAGGAAGGAGAATATCGCTGTAGTGCA CAGTATACAGGATTCTTTTCATCTAGATTTGGTTTGTTGTTTTCGTAAAGGAAAGTTGCCTGCTCACTGCACAGAGGTGGAAAAGGTTTCACACATAAAA ATAGGGCAGCATGTTCGATTTCGTACTGGACTGGTTGAACCTAGGTGGGGATGGAGAGGCGCATGCCACAATTCAAGAGGTGTTGTAACTGCTGTAAATA TTGATGGAGAAATAAGAGTTTCATTCTCTGGGTTGCACAATTTGTGGCGAGGAGATCCCGCGGATTTTGAGATAGATCAAATGTTTGAGGTGGGAGAATG GGTAAAAATAAAAGACAGTGCCACCGGGTGGAAAAGTTTGGGGCCTGGAAGCCTTGGAGTTGTACAAGGAGTGAGGCATCAAGATGATGGTTGGGATGGT ACTTTCCTTGTTGGGTTCTGTGGCGAACCTGAATTATGGGCAGGACCAGCATGTGAGCTTGAAACTGTGGATAAACTTGCAGTAGGCCAAAAGGTGAAGG TGAAGCCCCACGTAAAGCAGCCACGATTTGGTTGGTCAGGCCATACACATGAGAGCATTGGTTCTATATCAGCGATAGATCTAGATGGAAAACTGAGGAT ATTTACACCAGCTGGCTCCAAGGTCTGGATGCTTGATCCATCAGAAGTTGACGTGGTGGAGGAAGAGATAATACAAATTGGAGATTGGGTAAGAGTCAAA TCATCTATAGCTACCCCAGTATACCAATGGGGAGAGGTCACTCGTGATAGCATTGGAGTGGTACACAAGATGGAGGAAGGAGAGCTTTTGGTGGCATTTT GCTTCTTGGATCAGCTTTGGGTTTGCAAAGAATGGGAAATGGAAAAGGTAAGGGCATTTAAGGTAGGTGACAGTGTGAGATTTAGGGAACGACTGGTGAA GCCCAGGTGGGGATGGGGAATGGAAACCTGTGCTAGCAAGGGCCAAGTAGTTGGGGTGGATGCTAATGGAAAGCTACGAATTAAATTCAAATGGAGAGAA GGACGACCTTGGATTGGAGACCCAGCAGATATAATTCTCGATGAAAGCTCTAGTTTTGCTTGA
AA sequence Show only first row Show all	>Potri.001G274900.2 pacid=42790700 polypeptide=Potri.001G274900.2.p locus=Potri.001G274900 ID=Potri.001G274900.2.v4.1 annot-version=v4.1 MADTRSRNGKKIPIPKCPICQTVYNDHSHTPLLLQCGHSFCLNCLSRLLLSSSPCKPSQKSSLTCPKCRHVSPLGNSLLFLPKNFSLLSSLLPSSSASDS DSDSSDDESDVNPRRFHCSTTSGVGLAGNLCRDHELRIVKGISEVKWSGLLVKGKECKHKVVVRRVRVDDVADGNWVEKELDNLRRKVMWCRNVCGFYGV VKSGEDDLCVVMEKCFGSVKEQMEGNGGRLSLDQILRYGADIARGVIEIHAAGIVCLNLKPSNFLLDASGHVVVSDYGLPMILKKTSCSKGLLVPEADPL KTHWCIDCLSLSPYYSAPEAWEPLKKSLHLFRDGNIGISAKSDSWSFGCALVEMCTGFTPWAGLSAEEIYHAVVKEGRSPPQYEKVVGHGIPTELWKMIG ECLQFKASNRPTFHAMLAVFLRHLQGIPRSPAIPNTEPANCSRIDMLEQSPTSVLDIFPVKSNHLHQLLSDGDVDGVRDLLAKSASGNDGNSVISLLEAH NADGQTALHLACRRGCLKLVGAILEYSDVDVDIHDKDGNPPIVFALAAGSPECVRSLIRRSDYATCRMSESIGRSVAHVCAYYGQPDCMLELLLAGADAN AVDDDGESVLHVAITNKHTECAIVILENSGCRSMSFLNSKNMTPLHLCIEALNVTVVKRWLEVASEEEIAGAIDLPSSVGTALCMAAALRKDHETEGREL VRLLLAAGANPAAQDAENHQTALHTASAANDVELVKIILDAGVNANLRNVHGTIPLHLALAKGAKPCVELLLAAGADCNLQDEDGDNAFHIAAAAARLIR ENLDCIILMLQCPNASIKIRNNSGKTLCDLLESLPREWISEELLEALANKGVSLYPTVFEVGDWVKFKRGMKNPTYGWQGATCGSVGFVQSIPENGSLTV SFCTGVAHVLANEVVKVIPFDSGQLVQLKPDVIEPRYALHEQLRHSQGTVLCIEDEGFIRIGFRGASKGWQADPADFQRFEEFKVGDWVCVRKTPEAVKH DFGIVTAGSIGIVHGIRSDSSLLIEFSCVPAPCIFEPEEVEPVVPFKIGELVCVKRSIAEPSFAWGGETHHSVGRIFDIKSNGLLIIEIQNRSIPWTADP SDMEKVEDFKVGDWVRVKASVPSPKYGWDDVTRTSIGIVHNLEDDGDMGVAFSFRSRPFLCSMTDMEKVSPFKVGQEIRVMPSITQPLLGWSNESPATFG TVARIDMDGTLNVRVARRASLWKVAPGDAERLSGLAVGDWVRVKQCLGSRPSYEWNSFRKENIAVVHSIQDSFHLDLVCCFRKGKLPAHCTEVEKVSHIK IGQHVRFRTGLVEPRWGWRGACHNSRGVVTAVNIDGEIRVSFSGLHNLWRGDPADFEIDQMFEVGEWVKIKDSATGWKSLGPGSLGVVQGVRHQDDGWDG TFLVGFCGEPELWAGPACELETVDKLAVGQKVKVKPHVKQPRFGWSGHTHESIGSISAIDLDGKLRIFTPAGSKVWMLDPSEVDVVEEEIIQIGDWVRVK SSIATPVYQWGEVTRDSIGVVHKMEEGELLVAFCFLDQLWVCKEWEMEKVRAFKVGDSVRFRERLVKPRWGWGMETCASKGQVVGVDANGKLRIKFKWRE GRPWIGDPADIILDESSSFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	2.00	0.8672
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	3.46	0.8582	SDG29.1
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	5.00	0.8447
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	7.00	0.8416
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	7.54	0.8489
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	10.19	0.8485
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	10.90	0.8066	Pt-HAC1.3
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.003G089500 [exp]	11.66	0.7582
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	14.96	0.8357
AT4G10730			Protein kinase superfamily pro...		Potri.003G146000 [exp]	15.29	0.7507

Compare expression of checked genes

Potri.001G274900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.