Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62350 274 / 6e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46870 186 / 1e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09320 70 / 1e-13 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT3G42570 51 / 6e-08 peroxidase family protein (.1) AT3G27750 44 / 4e-05 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT5G39710 40 / 0.0009 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G64583 40 / 0.001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038200 [exp] 178 / 2e-55 AT3G46870 326 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G134300 [exp] 89 / 4e-21 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.009G169600 [exp] 64 / 7e-12 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.002G243600 [exp] 54 / 3e-08 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G111600 [exp] 47 / 8e-06 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 43 / 0.0001 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036049 [exp] 338 / 2e-118 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 335 / 2e-117 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040756 [exp] 182 / 9e-57 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016476 [exp] 179 / 1e-55 AT3G46870 346 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 45 / 2e-05 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017041 [exp] 45 / 3e-05 AT2G36240 436 / 4e-151 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022787 [exp] 44 / 6e-05 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 42 / 0.0002 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011646 [exp] 42 / 0.0004 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021362 [exp] 41 / 0.0006 AT2G36240 559 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G275000.1 pacid=42793416 polypeptide=Potri.001G275000.1.p locus=Potri.001G275000 ID=Potri.001G275000.1.v4.1 annot-version=v4.1 ATGTGGCGTTTGGCTTCAAATTTTCTAGGAAAAGCCTCCCTGTCTAGAAAACCCCATTCTCTCACTCAAAAACATCAATTTTTGGTGTTTTTTCGCTGCA TTTATAATCATTCAGCTTCAAGGCCTAGCTTATCGATATGGAGACGAAAGAAGGAGATGGGAAAAGAAGGATTGATGGCGGCCAAAGAGCTGAAGAGACT CCAATCGAATCCTGTCCGACTCGACCGGTTTATTACATCAAATGTTTCTCGCTTGCTCAAGTCTGATCTTCTTGCTGTTCTCGCTGAGTTTCAAAGGCAA GACCAGGTCTTTCTCTGCATGAAGTTATATGATGTTGTGCGCAAAGAGATTTGGTATCGGCCAGACATGTTCCTTTTCAGGGACATGCTTATGATGCTTG CAAGAAACAAGAAGGTAGATGAAGCAAATCAGGTTTGGCGAGATTTGAGGAGAGAGGAAGTTCTGTTTGATCAGCATACCTTCGGGGACATAATTAGAGC CTTCTTAGATAATGGATTGCCCTCAAAGGCAATGGACATATATGAGGAAATGAGACAATCTCCTGATCCACCAATATCTTTGCCTTTTCGTGTGATCTTG AAGGGGCTTATTCCGTTCCCAGAATTAAGAGAGGAGGTAAAAGATGACTTCCTGGAGCTTTTCCCTGACATGATCGTGTATGATCCAGCTGAGGACTTGT TTGAAGATCAAGAAAGGGAGAAGGATAGGGAAGATGATTAG
AA sequence Show only first row Show all	>Potri.001G275000.1 pacid=42793416 polypeptide=Potri.001G275000.1.p locus=Potri.001G275000 ID=Potri.001G275000.1.v4.1 annot-version=v4.1 MWRLASNFLGKASLSRKPHSLTQKHQFLVFFRCIYNHSASRPSLSIWRRKKEMGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQ DQVFLCMKLYDVVRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNGLPSKAMDIYEEMRQSPDPPISLPFRVIL KGLIPFPELREEVKDDFLELFPDMIVYDPAEDLFEDQEREKDREDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62350			Pentatricopeptide repeat (PPR)...		Potri.001G275000 [exp]	0	1
AT1G09794			Cox19 family protein (CHCH mot...		Potri.003G009800 [exp]	6.16	0.7299
AT3G01130			unknown protein		Potri.009G125832 [exp]	7.48	0.6972
AT5G14240			Thioredoxin superfamily protei...		Potri.017G066200 [exp]	9.79	0.6974
AT5G08040		TOM5	mitochondrial import receptor ...		Potri.015G058500 [exp]	10.67	0.6882
AT5G58575			unknown protein		Potri.009G074400 [exp]	14.38	0.6819
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	29.46	0.6449
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.017G066900 [exp]	36.05	0.6506
AT1G15270			Translation machinery associat...		Potri.001G181800 [exp]	36.53	0.6891
AT1G29850			double-stranded DNA-binding fa...		Potri.001G352600 [exp]	41.95	0.6672
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	44.35	0.6881

Compare expression of checked genes

Potri.001G275000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.