Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19390 1081 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 927 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2) AT4G24580 474 / 2e-153 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069700 [exp] 1491 / 0 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.002G104300 [exp] 631 / 0 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.005G157400 [exp] 627 / 0 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036047 [exp] 768 / 0 AT5G19390 635 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10036167 [exp] 478 / 2e-155 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036048 [exp] 413 / 3e-139 AT5G19390 414 / 3e-142 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10005733 [exp] 325 / 2e-104 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain CL0409 [poplar] [flax] PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.001G275200.1 pacid=42787795 polypeptide=Potri.001G275200.1.p locus=Potri.001G275200 ID=Potri.001G275200.1.v4.1 annot-version=v4.1 ATGTCGTCGGCTTCTTTAGCGGCTCCCGAGCGGCCAAGAGCCGGACCTTCCAATACGGTTTTCAAGAGTGGCCCACTTTTCATTTCTTCGAAAGGAATAG GCTGGAAGTCATGGAAGAAGCGGTGGTTTATCCTTACACGAACTTCCTTGGTGTTTTTCAAAAATGACCCTAGTGCTCTACCACAAAGAGGAGGTGAAGT AAATCTTACTTTGGGGGGCATTGATTTGAATAACACTGGAAGTGTCGTTGTTAGAGAAGACAAGAAATTGTTAACTGTTTTGTTTCCTGATGGACGTGAT GGGCGAGCTTTCACCCTTAAGGCTGAAACATCAGAGGATTTGTATGAGTGGAAGACAGCCCTTGAACATGCCCTTTCACAAGCACCAAGTGCTGCCCTTG TAATTGGACACAACAGGGTATTCCAAAGTGACACAAATGAAGCTGTTGAAGGGTCTTTCCATCAATGGAGGGATAAACATCCTGTTAAGTCAATGGTTGT TGGAAGACCCATTTTACTTGCCCTCGAAGATATTGATGGCGGTCCATCATTCCTTGAGAAAGCTCTCCGATTTCTCGAGAAGTTTGGAACCAAAGTTGAA GGAATATTACGTCAGTCTGCAGATGTTGAGGAAGTTGACCACAGAGTACAAGAATACGAACAAGGCAAGACCGAGTTTGAATCAGATGAGGATGCTCATG TTGTTGGTGATTGTGTGAAGCATGTTTTAAGGGAACTGCCCTCCTCTCCTGTTCCTGCATCTTGCTGCACTGCATTGCTGGAGGCTTATAAAATTGATCG GAAGGAAGCTCGGATTAATGCAATGCGGTCTGCAATAGTGGAGACATTTCCAGAACCAAATCGACGCTTATTACAGAGAATTCTGAAGATGATGCACACA ATCTCTTCACATGCTCATGAAAATCGAATGAATCCATCTGCTGTTGCTGCTTGCATGGCACCCTTGCTACTACGTCCTTTATTAGCCGGGGAATGTGAGC TGGAGGATGACTTCGATGTTAACGGTGATAATTCTGCTCAGCTGCTTGCTGCTGCAAATGCTGCTAATAATGCTCAAGCCATCATTACAACACTTCTGGA GGAGTATGAAAATATTTTTGATGATGAAAATCTACACAGGTGCTCTATTTCAGCTGATTCCCAGATAGAAAACAGTGCGAGTGATGATTCAAGCGATGAT GAAAATATGGACATGAAAGACAATGGTTATCATGATGCAGAAAATGAAGTTGATCAAGATACAGATAATGATCCTGAACGTGCTCTCAGTGGAAAATTGA GTGAAACCAGTGGTTCCGCTAGCAGTGATCTCTATGATTATAAGGCATTTGGTGGTGATGATTCAGATATTGGATCACCTAGAACCAATAATGCTCCAGC TGAGAGTTCAAATATTTCTGTTGATCCTGTACAAATGAGAGATTCCAATGCTCAACTCATAGGACAACAAAGTAAACCAAAGAAAGGAAATGAAAATTCA ACAAGCGAGATGGATGCTTCAAGTGTGTTACCGATTGGTGAATCTTACCAATCAATGGGTGCAATTCTAGCCTCGGCGGATCCTGTGTCTCCCATACTCA TATCTGGACTGGAATCATCTGCTGAGAAGTCAGCGGGTAAAGTTTCAGCCTCCAATCTCAATGGGAAGCGATCAACATTCTGGGGAAGAAGTAATGCCAG AAAGACACCATCAATGGAATCAGTCGATTCTTCTGCAGAAGAGGAGTTTGCTATTCAGAGGCTTGAGATTGCAAAGAATGACTTGAGGCACAGAATTGCA AAGGAGGCTCGTGGAAATGCAATTTTACAAGCAAGCTTAGAGAGGAGAAAGCAAGCTTTGCATGAGCGTCGCTTGGCACTTGAACAAGATGTTGCAAGAC TGCAAGAGCAGCTGCAAGCTGAAAGAGATCTTAGAGCTGCATTGGAAGTTGGTTTGAGCATGTCTTCTGGACAGTTTTCCAATTCTCGCGGCATGGATTC TAAAACAAGGGCTGAGCTTGAGGAGATTGCTCTAGCTGAAGCGGATGTGACCAGGTTGAAGCAAAAAGTTGCGGAACTTCACCATCAACTTAATCAGCAA AGACAGCATCATTATGGTTCACTCTCGGATGCAAGTGACTGTTATCAACATGTTCAAAATCATAACCCTCCACAGAGATTTTTGCAGCAAGATTTTGATA CAACCCTTGCTTTTGTTAATCATGAGAGGAAACAAAGAACTGAGGAGGGTTTGTTGGGGACTGATCGGAGACATCTTAAAGGACCGGGGTTAGCAACTGG AAGCAGCAGCAGGCAACCTCCTCGAAATCAATTTATGGAATCAGCAAGTATTAGTGACTCAAAAAGTACCGAGGCATCAACAAATATGTCCATGGATGAG CTTTGTGGTATTGATTCTGCTCCCTCCACTTCCAGAGCGGTGGAGGTGATGGACTATCCAAGACATCCATCAGCAGCATCTTCAGCTTTGGTAGAATTAA CAACTCGGCTGGATTTTTTCAAGGAAAGGCGTTCTCAGCTCATGGAACAACTCCACAACCTTGATCTGAACTACGGCACAACATCTTCGCAAGATTTTAT TTATAGACCATCATCCCCTCCATGGAACTGA
AA sequence Show only first row Show all	>Potri.001G275200.1 pacid=42787795 polypeptide=Potri.001G275200.1.p locus=Potri.001G275200 ID=Potri.001G275200.1.v4.1 annot-version=v4.1 MSSASLAAPERPRAGPSNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNTGSVVVREDKKLLTVLFPDGRD GRAFTLKAETSEDLYEWKTALEHALSQAPSAALVIGHNRVFQSDTNEAVEGSFHQWRDKHPVKSMVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVE GILRQSADVEEVDHRVQEYEQGKTEFESDEDAHVVGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARINAMRSAIVETFPEPNRRLLQRILKMMHT ISSHAHENRMNPSAVAACMAPLLLRPLLAGECELEDDFDVNGDNSAQLLAAANAANNAQAIITTLLEEYENIFDDENLHRCSISADSQIENSASDDSSDD ENMDMKDNGYHDAENEVDQDTDNDPERALSGKLSETSGSASSDLYDYKAFGGDDSDIGSPRTNNAPAESSNISVDPVQMRDSNAQLIGQQSKPKKGNENS TSEMDASSVLPIGESYQSMGAILASADPVSPILISGLESSAEKSAGKVSASNLNGKRSTFWGRSNARKTPSMESVDSSAEEEFAIQRLEIAKNDLRHRIA KEARGNAILQASLERRKQALHERRLALEQDVARLQEQLQAERDLRAALEVGLSMSSGQFSNSRGMDSKTRAELEEIALAEADVTRLKQKVAELHHQLNQQ RQHHYGSLSDASDCYQHVQNHNPPQRFLQQDFDTTLAFVNHERKQRTEEGLLGTDRRHLKGPGLATGSSSRQPPRNQFMESASISDSKSTEASTNMSMDE LCGIDSAPSTSRAVEVMDYPRHPSAASSALVELTTRLDFFKERRSQLMEQLHNLDLNYGTTSSQDFIYRPSSPPWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	10.19	0.8419
AT5G42620			metalloendopeptidases;zinc ion...		Potri.002G133300 [exp]	17.83	0.8045
AT1G01540			Protein kinase superfamily pro...		Potri.014G088800 [exp]	18.00	0.7726
AT3G26700			Protein kinase superfamily pro...		Potri.014G144800 [exp]	18.33	0.7862
AT4G10550			Subtilase family protein (.1.2...		Potri.001G450401 [exp]	18.33	0.8010
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	18.81	0.8403
AT1G67040			unknown protein		Potri.004G098300 [exp]	18.89	0.7826
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	21.84	0.7578
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	22.71	0.8077
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	31.54	0.8053

Compare expression of checked genes

Potri.001G275200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.