Plant FIBer expression Database

Potri.001G275300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29070 290 / 3e-99 Phospholipase A2 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030011
[exp]
308 / 1e-106 AT4G29070 264 / 6e-89 Phospholipase A2 family protein (.1.2)
Lus10035314
[exp]
307 / 2e-106 AT4G29070 266 / 3e-90 Phospholipase A2 family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G275300.4 pacid=42790579 polypeptide=Potri.001G275300.4.p locus=Potri.001G275300 ID=Potri.001G275300.4.v4.1 annot-version=v4.1
ATGAACTTTGAAGAGTTTAAGGTTAATACCCCATGGTTCAAGATGACTTCAAATAAGGATTCGGGAACAAATCCTAAACCAGCAACTGCGGTTTTATCAA
TGGGTTGTATGATGGGACAGCCGGGGCAACAACCACGTTTTGATATCAAGTTCTGGGGATGGTCGCTTTTAGCGATTGTTCCATGGGCTATCAATGCGAA
AGATAAAATTAGAGCACCAGATACCATAAACAAGAAGTTGAAAAGACACGCCCAGTCGCGTGGGGTTGTTGACAGTGGTAGGGGCAATCCTTTGCGGTTT
AGACCTTATGTTTCTAAGGTCCCGTGGCATACTGGTGCAAGAGCCTTTCTTTCTCAGTTATTTCCACGATATGGTCATTATTGTGGGCCGAATTGGTCGA
GTGGGAAAGATGGGGGTTCTCTTCTTTGGGATAAGCGGCCGATTGATTGGTTGGATTACTGTTGTTATTGCCATGATATTGGTTACGACTCTCATGATCA
AGCTGAACTGTTAAAGGCTGACATGGCATTTCTTCAGTGCTTGGAGAGGCCGCATATGGCTACCAAAGGAGATGCTCACGTAGCTCACGTTTACAAGACG
ATGTGCATCACAGGTTTAAAGAACATGCTTATACCATACAGAACACACCTTGTGAAATTACGGTCTGGTCAACCTTTGATAAATTTTGAGTGGCTGAGCA
AAGTGAAATGGAGAAGATGGAATTTGCAGAAAACTTGA
AA sequence
>Potri.001G275300.4 pacid=42790579 polypeptide=Potri.001G275300.4.p locus=Potri.001G275300 ID=Potri.001G275300.4.v4.1 annot-version=v4.1
MNFEEFKVNTPWFKMTSNKDSGTNPKPATAVLSMGCMMGQPGQQPRFDIKFWGWSLLAIVPWAINAKDKIRAPDTINKKLKRHAQSRGVVDSGRGNPLRF
RPYVSKVPWHTGARAFLSQLFPRYGHYCGPNWSSGKDGGSLLWDKRPIDWLDYCCYCHDIGYDSHDQAELLKADMAFLQCLERPHMATKGDAHVAHVYKT
MCITGLKNMLIPYRTHLVKLRSGQPLINFEWLSKVKWRRWNLQKT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29070 Phospholipase A2 family protei... Potri.001G275300
[exp]
0 1
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Potri.018G090800
[exp]
1.41 0.9538
AT5G43050 NPQ6 NONPHOTOCHEMICAL QUENCHING 6, ... Potri.012G134700
[exp]
5.65 0.9502
AT1G28150 unknown protein Potri.004G066900
[exp]
7.07 0.9495
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.005G050700
[exp]
8.24 0.9411
AT4G09620 Mitochondrial transcription te... Potri.013G113500
[exp]
8.36 0.9470
AT4G13220 unknown protein Potri.002G251800
[exp]
9.11 0.9573
AT5G59030 COPT1 copper transporter 1 (.1) Potri.009G038800
[exp]
10.48 0.9403 COPT1.2
AT5G43260 chaperone protein dnaJ-related... Potri.003G171800
[exp]
12.00 0.9474
AT4G35760 NAD(P)H dehydrogenase (quinone... Potri.005G106500
[exp]
14.49 0.9346
AT1G29700 Metallo-hydrolase/oxidoreducta... Potri.008G117600
[exp]
15.49 0.9524

Potri.001G275300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.