Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19400 758 / 0 SMG7 Telomerase activating protein Est1 (.1.2.3) AT1G28260 202 / 1e-53 Telomerase activating protein Est1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038500 [exp] 899 / 0 AT5G19400 620 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.004G045300 [exp] 257 / 1e-71 AT1G28260 555 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.011G053800 [exp] 257 / 2e-71 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009689 [exp] 1187 / 0 AT5G19400 738 / 0.0 Telomerase activating protein Est1 (.1.2.3) Lus10036041 [exp] 547 / 0 AT5G19400 416 / 3e-136 Telomerase activating protein Est1 (.1.2.3) Lus10015430 [exp] 209 / 5e-56 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10014007 [exp] 172 / 4e-44 AT1G28260 473 / 4e-154 Telomerase activating protein Est1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF10373 [poplar] [flax] EST1_DNA_bind Est1 DNA/RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G275400.8 pacid=42792517 polypeptide=Potri.001G275400.8.p locus=Potri.001G275400 ID=Potri.001G275400.8.v4.1 annot-version=v4.1 ATGATTGTGCAGATGGATAAAATGTCTGCTCCTTCATCACGGGAGCGAGCCCAACGCCTGTATGAGAAGAACCTTGAGTTGGAGAATAAGCGCCGGAGGT CAGCTCAGGCTCGAGTTCCATCTGATCCCAATTCATGGCAACAGATGCGTGAGAACTATGAAGCGATAATTCTTGAGGACCATGGTTTTTCTGAGCAGCA CAATATAGAATATTCTCTGTGGCAATTGCATTATAGGCGCATAGAGGAACTAAGATCTCACTATAGTGCTGTTTTAGCTTCTACTGGCTCAAATGCACCT CCAGGTCCGAAAGTTCCTGCACGACCTGATCGAATCAACAAGATAAGGCTTCAATTTAAAACATTCCTTTCAGAAGCAACTGGATTTTATCACGATCTGA TTCTGAAGATCAGAGCAAAGTATGGGCTTCCTCTGGGTTATTTTTCTGAGGATTCAGATAATCGAGCTGTTACGGAGACTGATGCTAAGAAAGGTTTGGT CTCTTGTCACCGTTGTTTGATATACTTGGGTGACCTGGCTAGGTATAAAGGACTATATGGGGATGGTGACTCCAAAACTCGTGAGTATGCAGCAGCTTCA AGTTACTACTTGCAAGCTGCATCTCTGTGGCCATCAAGCGGGAACCCCCATCACCAGCTTGCCATTTTGGCTTCCTATTCAGGGGATGAGTTGGTGGCTG TGTATCGCTATTTTAGGAGTCTGGCAGTGGATAATCCCTTTGCAACTGCAAGAGATAACTTGATTGTTGCTTTTGAGAAGAATCGTCTGAGCTACTCTCA GCTGCTTGGGGATGCGAAAGTCTCTGGTGTAAAGGATTCACCTGTGCGCTTGACTGGCAAAGGTAGAGGGAAGAGAGAAGCAAACCCTGCATCTAAGGAT ATGAAACTGGAAGCAGGTGCTGTCAAGGAAAAGACATCTAGTATTCGTGAGATTCACAAGTCCTTCTGTGTTCGGTTTGTCCGACTGAATGGCATTCTTT TTACACGCACTAGCTTGGAGACATTTTCGGAAGTTCTGGCACTGGTTAGCATTGGATTCTCAGAGCTTGTTTCTTCTGGACCAGAAGAGGAGCTTAATTT TGGTGCAGATGCTTCTGAAAATGGACTTTTCATTGTTCGCCTCATCTCCATTCTTATATTTACTGTTCACCATGTGAAGAAGGAGGCTGAAGGTCAGACA TATGCAGAAATCGTGCAGCGTGCTGTTCTGCTTCAGAATGCCTTTACTGCTGTTTTTGAGTTCATGGGACACATATTAGATAGGTGTGCACAGCTTCATG ATCCCTCCTCAAGTTACCTATTACCTGGCATTATGGTTTTTGTAGAATGGTTGGCTTGTTGTCCTGACATAGCATCAGGCAGTGACATAGATGAGAAACA GTCAGCTGTAAGATTGAACTTTTGGAATCACTGCATATCATTTTTGAACAAGATTGTTTCATGTTGCTCAATGTCTCTTGATGACAATGAAGACGAGACA TGCTTCTTTAACATGAGCCGTTATGAAGAAGGAGAAACAGAAAACCGGCTTGCTTTGTGGGAAGACTTTGAGTTGAGAGGGTTTTCACCACTTCTTCCTG CACATACTATTTTAGACTTTTCAAGGAAGCACTTGTTTGGAAGCGATGGCAGTAAGGAAAAAATAGCTCGTGCTAAAAGGATTCTAGCAGCAGGGAAGGC CTTAGCAAATATGGTTAGGGTCGATCAGCAAACAATATATTTTGATTCAAAGATGAAAAAATTTGTTATTGGTGCTGAGCCTCAAATTTCAGATGATGGG TTGTTGATAGCTGCTGATGTGATTCAAGAAATGCAGCCTGAAGAAACAATGAATTTGGTAGCTTTGCAGCCTAATCCACACCCATACACTGAAGGTGAAG AGGAAGATGAAGTGATTGTTTTCAAGCCAGTAGTGACTGAGAAGCGAAATGATGTGCTTAGTCCAAAATGGGCCCCTCATGAAGGTCTAAAACCTAGTCG AAATGCAGCAGATGATTTGCACTTTTATGGCAGTTCTGTTTCAGCTCCTCTTGATAATCTTCGGCAGCAGGCTGCTTTTGATGCAGGTTCTCAGATATCT GTATCTCATGGTACTATTGTCCCTCAGCCTCTCCAACATATCCAGCCACATACTTCAAAGTGGTTAGTTGAAGAAGCTGCTTCTCTTGCCAATGGCTTGA AAGGTGTCAGGTTCATGGAAAATGGACATGTCATGGAACATGAGATGCAGAAAGATTTAGGCATGGCCTATCAAGCTGTTCGTCCAGTTTCTGTCCAACA ATCTTTGAATGTAAATACTGGTATGTTTTATGGTCAGACAAAAGTGGCAGAAACTGCTGTTCCATCAAAGGTTGATACTTATGCTCCTTCTGGAGTTATT GCTGAAAGTTTGGCTGTGAAGACATCGGCAGCTTTGCCACCAGGTTTGAGAAAAAGTCCAGTTAGCCGACCTCTAAGGCACCTTGGGCCTCCCCCAGGTT TTAATTCTGTTCCTCCTAAGCAAGCGAGTGAACCAGTTTCTGGTTCAGTTTTGATGGCTGAGAATCCACTACAGGATGATTATAGCTGGTTGGATGGCTA TCAGCTGCCATCATCAGCAAAAGTCTCTGGACTCAATGGTTCTGCTAATGTCACTTCTCATGCAGCACCACAGTATTCGAGTAACAGCAGTGGCTTGAGT GGGACAGCCAGCTTTCCCTTCCCTGGGAAACAGGTACCGCCAGTGCAAACCCAAGCAGAGAAACAGAAAGGCTGGCAGAACTATCTGGGTTTTGAGCATC AACGGGTACAGCAAGAACACCAGCTGCAGCAACAACTCATTAATGGAAACCAGCAGTTTTCTCCAATTCCTGAGCAATATCATGGACAGTCCATCTGGGG TGGTCGTTATATTGTGTGA
AA sequence Show only first row Show all	>Potri.001G275400.8 pacid=42792517 polypeptide=Potri.001G275400.8.p locus=Potri.001G275400 ID=Potri.001G275400.8.v4.1 annot-version=v4.1 MIVQMDKMSAPSSRERAQRLYEKNLELENKRRRSAQARVPSDPNSWQQMRENYEAIILEDHGFSEQHNIEYSLWQLHYRRIEELRSHYSAVLASTGSNAP PGPKVPARPDRINKIRLQFKTFLSEATGFYHDLILKIRAKYGLPLGYFSEDSDNRAVTETDAKKGLVSCHRCLIYLGDLARYKGLYGDGDSKTREYAAAS SYYLQAASLWPSSGNPHHQLAILASYSGDELVAVYRYFRSLAVDNPFATARDNLIVAFEKNRLSYSQLLGDAKVSGVKDSPVRLTGKGRGKREANPASKD MKLEAGAVKEKTSSIREIHKSFCVRFVRLNGILFTRTSLETFSEVLALVSIGFSELVSSGPEEELNFGADASENGLFIVRLISILIFTVHHVKKEAEGQT YAEIVQRAVLLQNAFTAVFEFMGHILDRCAQLHDPSSSYLLPGIMVFVEWLACCPDIASGSDIDEKQSAVRLNFWNHCISFLNKIVSCCSMSLDDNEDET CFFNMSRYEEGETENRLALWEDFELRGFSPLLPAHTILDFSRKHLFGSDGSKEKIARAKRILAAGKALANMVRVDQQTIYFDSKMKKFVIGAEPQISDDG LLIAADVIQEMQPEETMNLVALQPNPHPYTEGEEEDEVIVFKPVVTEKRNDVLSPKWAPHEGLKPSRNAADDLHFYGSSVSAPLDNLRQQAAFDAGSQIS VSHGTIVPQPLQHIQPHTSKWLVEEAASLANGLKGVRFMENGHVMEHEMQKDLGMAYQAVRPVSVQQSLNVNTGMFYGQTKVAETAVPSKVDTYAPSGVI AESLAVKTSAALPPGLRKSPVSRPLRHLGPPPGFNSVPPKQASEPVSGSVLMAENPLQDDYSWLDGYQLPSSAKVSGLNGSANVTSHAAPQYSSNSSGLS GTASFPFPGKQVPPVQTQAEKQKGWQNYLGFEHQRVQQEHQLQQQLINGNQQFSPIPEQYHGQSIWGGRYIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	2.44	0.8329
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	6.24	0.8233
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	8.71	0.8229
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	9.16	0.7953
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	10.00	0.8024
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	14.28	0.8081
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Potri.007G052200 [exp]	15.81	0.7398
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	16.73	0.7285
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	17.86	0.8012
AT1G65540			LETM1-like protein (.1)		Potri.008G078600 [exp]	18.76	0.7578

Compare expression of checked genes

Potri.001G275400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.