Plant FIBer expression Database

Potri.001G275600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13500 543 / 0 unknown protein
AT2G25260 468 / 4e-166 unknown protein
AT5G25265 461 / 2e-163 unknown protein
AT3G01720 61 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G070000
[exp]
698 / 0 AT5G13500 515 / 0.0 unknown protein
Potri.001G028100
[exp]
555 / 0 AT5G13500 570 / 0.0 unknown protein
Potri.003G195600
[exp]
542 / 0 AT5G13500 532 / 0.0 unknown protein
Potri.006G258800
[exp]
452 / 1e-159 AT5G25265 577 / 0.0 unknown protein
Potri.018G023100
[exp]
449 / 2e-158 AT5G25265 583 / 0.0 unknown protein
Potri.001G336400
[exp]
65 / 3e-11 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036037
[exp]
628 / 0 AT5G13500 542 / 0.0 unknown protein
Lus10009691
[exp]
627 / 0 AT5G13500 541 / 0.0 unknown protein
Lus10041028
[exp]
449 / 1e-158 AT5G25265 618 / 0.0 unknown protein
Lus10005347
[exp]
448 / 4e-158 AT5G25265 612 / 0.0 unknown protein
Lus10022320
[exp]
58 / 6e-09 AT3G01720 1181 / 0.0 unknown protein
Lus10014878
[exp]
58 / 7e-09 AT3G01720 1197 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G275600.1 pacid=42792444 polypeptide=Potri.001G275600.1.p locus=Potri.001G275600 ID=Potri.001G275600.1.v4.1 annot-version=v4.1
ATGATTGGGAGAAAAAATATGGGGCGAGCGTCGCCATTGCTTTTGGTGCTTTTGGCACTAGGATTTTTCTTTGCGATGTATAACTTGTTGACTTTGGTAA
TACAATATAAGGATTCTAGTTCAGGAGCTGGATCAGGGAATCCTGATCCTGTAATACGGATGCCAACCAATTTGAGGAAATTAGGGAAGTCGAATTTGAA
ATTCCATGTTGCCCTTACGGCTACTGATGCTCCTTATAGTCAATGGCAATGCCGGATTATGTATTATTGGTATAAGAAGATGAAAAACATGCCAGGATCA
GACATGGGAAAGTTTACTCGAGTGTTGCATTCGGGAAAAGGTGATCATTTGATGGACGAGATTCCAACTTTTGTTGTTGATCCTCTTCCGGAGGGCTTAG
ATCGGGGCTATATTGTCTTAAATAGACCGTGGGCTTTTGTGCAATGGCTGGAAAAAGCAACTATTGAGGAAGAATACATTCTAATGGCAGAACCTGACCA
CATATTTGCAAATCCTTTGCCTAACTTGGCACATGGAGATAATCCAGCAGGGTTTCCATTTTTCTATATTAAACCAACTGAACACGAGAAAATTGTTCAA
AAGTTTTATCCCGAGGAGAAGGGTCCTGTGACCGACGTTGATCCAATTGGCAATTCTCCCGTAATAATAAAAAAGTCACTGCTGGAGGAAATTTCACCAA
CATGGGTGAATGTTTCGCTAAGAATGAAAGATGACCCAGAGACTGATAAGGCATTTGGTTGGGTGCTTGAAATGTATGCCTATGCTGTAGCATCAGCATT
GCATGGTGTGCGGCATATACTCCATGAAGACTTTATGCTACAGCCACCATGGGATTTGGAAGTTGGGAAGAGATTTATTATCCACTACACTTATGGATGC
GACTACAATATGAAGGGAGAATTAACATATGGAAAGATTGGAGAATGGCGGTTTGACAAGAGATCCTATCTCAGTGGTCCTCCACCAAAGAACATTTCCC
TGCCCCCACCAGGAGTTCCTGAAAGTGTGGTGAGACTTGTAACGATGGTTAATGAGGCTACAGCTAACATCCCTGGCTGGGACTCATTAAACAGTGGCTG
A
AA sequence
>Potri.001G275600.1 pacid=42792444 polypeptide=Potri.001G275600.1.p locus=Potri.001G275600 ID=Potri.001G275600.1.v4.1 annot-version=v4.1
MIGRKNMGRASPLLLVLLALGFFFAMYNLLTLVIQYKDSSSGAGSGNPDPVIRMPTNLRKLGKSNLKFHVALTATDAPYSQWQCRIMYYWYKKMKNMPGS
DMGKFTRVLHSGKGDHLMDEIPTFVVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEEYILMAEPDHIFANPLPNLAHGDNPAGFPFFYIKPTEHEKIVQ
KFYPEEKGPVTDVDPIGNSPVIIKKSLLEEISPTWVNVSLRMKDDPETDKAFGWVLEMYAYAVASALHGVRHILHEDFMLQPPWDLEVGKRFIIHYTYGC
DYNMKGELTYGKIGEWRFDKRSYLSGPPPKNISLPPPGVPESVVRLVTMVNEATANIPGWDSLNSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13500 unknown protein Potri.001G275600
[exp]
0 1
AT4G35220 Cyclase family protein (.1) Potri.009G097300
[exp]
2.82 0.6760
AT1G80610 unknown protein Potri.001G313900
[exp]
3.87 0.6604
AT3G02875 ILR1 IAA-LEUCINE RESISTANT 1, Pepti... Potri.016G074100
[exp]
9.59 0.6601
AT4G00720 ASKTHETA, ATSK3... SHAGGY-LIKE PROTEIN KINASE THE... Potri.002G155000
[exp]
13.63 0.6947
AT4G34200 EDA9 embryo sac development arrest ... Potri.009G096600
[exp]
14.69 0.6250
AT4G20820 FAD-binding Berberine family p... Potri.001G461500
[exp]
16.49 0.6501
AT1G72550 tRNA synthetase beta subunit f... Potri.013G068100
[exp]
18.70 0.6349
AT1G74030 ENO1 enolase 1 (.1) Potri.012G057500
[exp]
22.24 0.6369
AT4G34640 ERG9, SQS1 squalene synthase 1 (.1) Potri.009G123100
[exp]
30.62 0.6510 SQS1.2
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400
[exp]
31.46 0.6042

Potri.001G275600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.