Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12300 285 / 6e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G55530 214 / 6e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 194 / 1e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070400 [exp] 705 / 0 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 271 / 9e-87 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 212 / 4e-64 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.005G026700 [exp] 43 / 0.0002 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009692 [exp] 305 / 3e-101 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003765 [exp] 223 / 3e-68 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10036036 [exp] 216 / 6e-66 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032578 [exp] 199 / 1e-59 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 196 / 2e-59 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10001346 [exp] 110 / 9e-28 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 100 / 2e-23 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009693 [exp] 66 / 2e-13 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G275800.1 pacid=42788924 polypeptide=Potri.001G275800.1.p locus=Potri.001G275800 ID=Potri.001G275800.1.v4.1 annot-version=v4.1 ATGGATTCTTTCAATCAATCAACTGGGTTCAGGTATAATCCAAATTCAAACACGATGGGCGATGCAGATGGCGATTCTGAGTTCTGTGGGATTCTTGAAA TCTATGTTCATCATGCCAGGAATATTCACAACATATGTATCTATGATAACCAAGATGTTTATGCAAAATTCTCTCTAACTTATAATCCTGATGAGACCCT TTCAACTAGAATTATCAATAGAGGTGGAAAAAACCCAGAATTCAATGAAAACTTGATGATGAAACTCGCTCAACTCGATGCAGTCCTCAAATGTGAGATT TGGATGCTTAGTAGAGCTAGAAACTACATGGAAGATCAGCTTCTAGGATTTGCTTTGGTCCCTATTTCACAAGTTTCTGGAAAAGGAAAGGTGACGCAAG ATTACAGCCTCTCCTCCACTGACCTCTTTCACTCTCCCGCTGGCACTATCAAGTTGTCTCTCTCCTTAAACACATCTTTTCCTGTCAAGCCCTCAACAAC AGCTGCCAAATCTTCGATATCATCAGAGGTCGTGCTTCTTGATAGAAAGGTATCAGAAGTTATTCTGGACCCAGTTGAGTATTCGAGAATTGAATTTCCT GATATCAATGTTGTTAGAGAGAATCAGCTAATGGTCTCAGAATATTTTGATGACTTGGGTTCCAGGCCTGGCTCATTTCTTCACCTCGGTGCCTCTCCGC AACCTGCTATTCATGATTGTGAAATGAACATAAATTCCTCCGAGCAAAATCAAGGTGGTTCCTCTTCACCTAGTGGCAGCATCCAAAATTCCAGTTTCTT GAGCTCTACGACAACAAGCCTGAGCGATGACAGAAATTCTTCTGACTCGGTTGATAGGAAGAGTCGTTTGGGTGGTCAATTCTCAAGCTCTCTTAACGTT TCGATCACCACGGAGGCTAATCATAACTCCTGTGCTTGTCCTGACACACCAACATCAAAGAAGGGAAATGAAGTCCGAGACGAAAAGGAATCGGATTTTA CAAGCAAGGAGGAGGAGAGCAGGAAGGAAGGAAACATGAGTCCTGTTAAATTTGGTCAAGTATTTTCATCCCCCCTAGGAAATATCAATCTCGAGGCCGA ACAGTCTGCAATGCAGCAGCAAATAGTAGATATGTACATGAGGAGCATGCAACAATTCACAGAATCCTTGGCCAAGATGGAGCTACCTATGGATCTTGAC AAGCTGGAATCTGCAGATCGTGGTGATGTGATTCAAAGTCTTAGCAATAAACTAGAGCTTGAGAAAAAGAAAAAGGACGGAGGGCGAGTGTTTTACGGTA GCCGCGCATTCTTCTAA
AA sequence Show only first row Show all	>Potri.001G275800.1 pacid=42788924 polypeptide=Potri.001G275800.1.p locus=Potri.001G275800 ID=Potri.001G275800.1.v4.1 annot-version=v4.1 MDSFNQSTGFRYNPNSNTMGDADGDSEFCGILEIYVHHARNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINRGGKNPEFNENLMMKLAQLDAVLKCEI WMLSRARNYMEDQLLGFALVPISQVSGKGKVTQDYSLSSTDLFHSPAGTIKLSLSLNTSFPVKPSTTAAKSSISSEVVLLDRKVSEVILDPVEYSRIEFP DINVVRENQLMVSEYFDDLGSRPGSFLHLGASPQPAIHDCEMNINSSEQNQGGSSSPSGSIQNSSFLSSTTTSLSDDRNSSDSVDRKSRLGGQFSSSLNV SITTEANHNSCACPDTPTSKKGNEVRDEKESDFTSKEEESRKEGNMSPVKFGQVFSSPLGNINLEAEQSAMQQQIVDMYMRSMQQFTESLAKMELPMDLD KLESADRGDVIQSLSNKLELEKKKKDGGRVFYGSRAFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12300			Calcium-dependent lipid-bindin...		Potri.001G275800 [exp]	0	1
AT3G08670			unknown protein		Potri.016G139500 [exp]	1.00	0.8400
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	6.48	0.7973
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	8.36	0.8015
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	8.94	0.7928
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	9.89	0.7854
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.012G126500 [exp]	12.32	0.7830	NAC037
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.010G130000 [exp]	14.49	0.7247
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	15.19	0.7774
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	16.97	0.7794	ATHB.11
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	18.02	0.7550

Compare expression of checked genes

Potri.001G275800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.