Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19430 236 / 2e-78 RING/U-box superfamily protein (.1.2) AT5G12310 218 / 4e-71 RING/U-box superfamily protein (.1) AT2G39100 47 / 4e-06 RING/U-box superfamily protein (.1) AT4G14220 46 / 1e-05 RHF1A RING-H2 group F1A (.1) AT2G42030 43 / 9e-05 RING/U-box superfamily protein (.1) AT3G05670 41 / 0.0005 RING/U-box protein (.1) AT1G14200 40 / 0.0007 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070600 [exp] 353 / 2e-124 AT5G19430 224 / 2e-73 RING/U-box superfamily protein (.1.2) Potri.010G092300 [exp] 45 / 3e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.005G244500 [exp] 42 / 9e-05 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 42 / 0.0001 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 41 / 0.0003 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.002G017400 [exp] 40 / 0.0006 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036034 [exp] 295 / 2e-101 AT5G19430 231 / 7e-76 RING/U-box superfamily protein (.1.2) Lus10009695 [exp] 295 / 3e-101 AT5G19430 221 / 3e-72 RING/U-box superfamily protein (.1.2) Lus10010513 [exp] 45 / 3e-05 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 45 / 4e-05 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10034165 [exp] 44 / 8e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10017253 [exp] 40 / 0.0003 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10034551 [exp] 40 / 0.0003 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10013606 [exp] 41 / 0.0006 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 41 / 0.0006 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10034088 [exp] 41 / 0.0007 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G275900.10 pacid=42789397 polypeptide=Potri.001G275900.10.p locus=Potri.001G275900 ID=Potri.001G275900.10.v4.1 annot-version=v4.1 ATGACATCAGTCATCAACATCGACGGTCACCAATTACTTCACTCCCTTCAAGATCAGGGTGAAATGGAGAGTAAAGTGGAGAGTAGCGAAAGGGCATGTG GGAATCATGGTGGGATTTGTGCTATATGCTTGGATAAGATTGTGCTTCAGGAAACTGCTCTTGTTAAAGGTTGCGAGCATGCGTACTGTGTGACGTGCAT CCTTAGATGGTCCACGTACACTAAGAATCCAACTTGTCCTCAGTGCAAACATCCATTTGAGTTTCTCAATATTCACCGTTCTCTTGATGGCAGCATCCAG GATTACATGTTTGAGGAAAGTGTCTGCCTCCTCCTTCGAGCCTCATGGTTCATGACTTTGACTGTGGAGGATCATGAAGATGTTTATGAAGATCCAGAGG ATTATTATCCATATGAATTTGAGGATGAGGATGATGATGATGATCTAGATGAAGTGTACCTGAGCAGTTCATCCAATCTTCGCATTGGAAATCGGAGGTG GGGAGATAATGGCTATGTTAGGGCAGGGCATCAAGAAGCAAGGCCAGTGTATCAAGCAGATTTCAAGGACTCGGGGGCGTGCACCTCACGCGAACCTAAG AAGAAAGAGGCTGCAAAAGATAGAACCGGGAGACGGGCGAAGAGGACACTCAAGCGTGAAGCTGCTGACAAGGCTGCTGCATCAAAACATCAGCAGCATT TGGCAAGGTTGGGCAGGAAGTGA
AA sequence Show only first row Show all	>Potri.001G275900.10 pacid=42789397 polypeptide=Potri.001G275900.10.p locus=Potri.001G275900 ID=Potri.001G275900.10.v4.1 annot-version=v4.1 MTSVINIDGHQLLHSLQDQGEMESKVESSERACGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWSTYTKNPTCPQCKHPFEFLNIHRSLDGSIQ DYMFEESVCLLLRASWFMTLTVEDHEDVYEDPEDYYPYEFEDEDDDDDLDEVYLSSSSNLRIGNRRWGDNGYVRAGHQEARPVYQADFKDSGACTSREPK KKEAAKDRTGRRAKRTLKREAADKAAASKHQQHLARLGRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	0	1
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	1.41	0.8568
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	5.47	0.7920
AT5G66290			unknown protein		Potri.005G116300 [exp]	7.87	0.7405
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	8.24	0.7516
AT1G77230			Tetratricopeptide repeat (TPR)...		Potri.002G076700 [exp]	9.79	0.7594
AT3G15351			unknown protein		Potri.002G142000 [exp]	10.39	0.8022
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	11.40	0.7773	NHX1.2
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	11.40	0.7634
AT2G42040			unknown protein		Potri.016G058100 [exp]	14.69	0.7819
AT3G47300		SELT	SELT-like protein precursor (....		Potri.009G047000 [exp]	19.36	0.7440

Compare expression of checked genes

Potri.001G275900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.