Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12440 79 / 5e-17 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G21100 58 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050600 [exp] 267 / 8e-86 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 226 / 6e-70 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255532 [exp] 84 / 9e-19 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 81 / 1e-17 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 52 / 7e-08 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 52 / 1e-07 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005023 [exp] 93 / 1e-21 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 91 / 7e-21 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 61 / 8e-11 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 61 / 1e-10 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014914 [exp] 59 / 3e-10 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Lus10039575 [exp] 57 / 2e-09 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 54 / 3e-08 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 47 / 7e-06 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.001G276300.1 pacid=42791768 polypeptide=Potri.001G276300.1.p locus=Potri.001G276300 ID=Potri.001G276300.1.v4.1 annot-version=v4.1 ATGTTTTCCACACCATCTTCTCTGTTGCCTCTCAATCCCATAGCAAGACCTTGTAATAACACTAACCCCTTTTCACAATCTTCTCCAAGAGTCACAAACA ATGGTTCTTTCCTTGATTTTGGAAAAAAAACCCGCCTCCGAATCCTTGGCCTGTTCAGTCCTTTTTTGTCCTCTGATAATATACGTTCTGGGTCTGTTTT AGTGCCACAATTCTCGAGGAATGGTGGTAGTGGCGGAGGTGATTGCAGTAATAGTAGTGTTGATTTCCCTGGTGAGTATCCATTAGATGATTATCTTTTG TTTCTTGATGGCCCCTCTTCAAAAAATAAGGGCTTTATGGACCACAAGGTTCAATTGGGTGGTTATCCGGTTGCTAATGGAGATAGCCATCTGCATAGAA GGAGATTTTCAGAGAGTGATGTGTGTTTTGGTGCTGAAGATGGGTATAAGCCTTGTTTGAATTTTGCTAGAGGCTTTTGCAAGAATGGAGAAGGTTGCAA GTTTGTTCATGGTGGTGAAAATATTGTTGAGGTTAACGGTGGTGGTGTTCTTGTGGGTTCACCAAGGGAAATGGAGGAACATTACTTGCAGCAACAAGAG GAGATGACGATAATGAAGGCTGCACAGCAACATCAGCAGCAAAGATTGGCTTATAACAAGTAA
AA sequence Show only first row Show all	>Potri.001G276300.1 pacid=42791768 polypeptide=Potri.001G276300.1.p locus=Potri.001G276300 ID=Potri.001G276300.1.v4.1 annot-version=v4.1 MFSTPSSLLPLNPIARPCNNTNPFSQSSPRVTNNGSFLDFGKKTRLRILGLFSPFLSSDNIRSGSVLVPQFSRNGGSGGGDCSNSSVDFPGEYPLDDYLL FLDGPSSKNKGFMDHKVQLGGYPVANGDSHLHRRRFSESDVCFGAEDGYKPCLNFARGFCKNGEGCKFVHGGENIVEVNGGGVLVGSPREMEEHYLQQQE EMTIMKAAQQHQQQRLAYNK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.001G276300 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	4.58	0.7623
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.008G152100 [exp]	11.09	0.7138
AT5G65650			Protein of unknown function (D...		Potri.007G027700 [exp]	11.74	0.6448
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	12.84	0.6585
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	15.36	0.7553
AT3G54250			GHMP kinase family protein (.1...		Potri.008G021100 [exp]	32.24	0.6743	MVD1.1
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	33.33	0.5969
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	38.23	0.6212	UXS2.2
AT3G50610			unknown protein		Potri.007G041601 [exp]	58.24	0.5727
AT4G25030			unknown protein		Potri.010G219900 [exp]	64.29	0.6356

Compare expression of checked genes

Potri.001G276300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.