Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 863 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 345 / 6e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 339 / 1e-105 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 325 / 2e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 321 / 3e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 309 / 1e-95 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G55840 319 / 7e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 311 / 1e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 306 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31840 306 / 2e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147700 [exp] 361 / 4e-115 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 363 / 1e-114 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 342 / 4e-107 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 348 / 3e-106 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 338 / 3e-105 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.003G105700 [exp] 336 / 1e-103 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G234500 [exp] 330 / 4e-102 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 325 / 1e-101 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G137200 [exp] 330 / 5e-101 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007468 [exp] 926 / 0 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028943 [exp] 367 / 4e-123 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 351 / 3e-111 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 351 / 5e-110 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 348 / 1e-108 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 352 / 4e-108 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 338 / 3e-104 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 324 / 9e-101 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 322 / 4e-99 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 321 / 1e-98 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G276500.6 pacid=42787606 polypeptide=Potri.001G276500.6.p locus=Potri.001G276500 ID=Potri.001G276500.6.v4.1 annot-version=v4.1 ATGGATCTTTTTCTACTTAATCAAAAACACACTCTAACAATCCTCAAAACCCACAAAAGATATAACTTCATCAGTTATCTTCTAAACCCTGCCTCTAAAT CTAGCTTTAGATGTCTCCAAACAATAGAAACCTCTCAAAACCCATATAAAGAACCATTTTCTTCAGCAACAACCCTGCCTGATTCTTTATTGGTGGAGAA GATCATCTTCAATTTAAAACATGGTAATGTAAATTCTCTGCTTTCCTATCAACTTCGCTTGAACCCATCAGTCATTGTTGATGTTTTATGTCGTTGTAAT GGTAATTTGCAACTTGGTCAAAGGTTTATTGATTCGTCAGTGTTAAATGGTTCAAACTTTAAGCATTCATCCGTTTCATTGAGTGCAATGGTTCATGTTT TTGTTCGTAGTAGAAGATTATCTGATGCACAAGCTTTGATTCTTAGAATGATTAGGAGAAGTGGGGTTTCGAGGGTTGAGGTTGTTGAGGCTTTGGTATC ATCGATGTGTGGCAATTGTGGGACTAATAATTTGGTTTTTGATTTGTTGATAAGAACTTATGTGCAAGCTAGGAAGTTAAGGGAAGGGACTGAGGCGTTT AGAATTTTGAGGAGTAAAGGGTATTTGGTGTCTATAAATGCTTGCAATAGTCTTCTTGGAGGGTTAGTGAAGATAGACTGGGTTGAATTGGCATGGGAAG TGCATAGGGAAGTTGTTAGAAGTGGGATTGAATTGAATGTTTATACATTAAACATTATGGTCAATGCTTTGTGTAAAGATGGTAAATTTGATGATGTCAA GTCATTTTTAAGTGAGATGGAGGGAAACGGGATTTATGCAGATATGGTGACTTATAATACTTTAATTGGTGCATATTGTCGTGAAGGACTTTTAGAAGAA GCTTTTGAGATAATGAACTCTATGGCAGATAAAGGTTTGAAACCGAGTCTTTTTACATATAATGCTATTATAAATGGTCTGTGTAAAAAGGGAAGATATG CAAGAGCAAAGGGAATTTTGATTGAGATGCTGAACATTGGGTTGAGTCCTGATACTACTACGTATAACACATTGCTTGTTGAGAGCTGCAGAAGAGACAA TTTTTCTGAAGCCAAAGAAATTTTTGGTGAAATGTTACGTCAGGGTGTTGTTCCTGATTTAGTAAGCTTTAGTTCCCTTATTGCAGTTTTTTCAAGGAAC AGACACCTTGATCAGGCATTGGTGTACTTTAGAGATATGAAGAAATTTGGTTTGGTTCCAGATAATGTGATTTACACTGTTCTTATGCATGGTTATTGTA GAAATGGCAATATGTTGGAGGCTTTGAAGATACGGGATGAAATGCTGGAGCAGGGTTGTGTCTTGGATGTGATTGCATACAATACTATATTAAATGGGTT GTGCAAAGAAAAGATGCTCACAGATGCAGATAAGCTGTTCGATGAGATGGTGGAAAGGGGTGCACTCCCTGATTTTTACACTTTCACCACACTTATTCAT GGCCATTGTCAGGACGGGAATATGACTAAAGCACTAAGCTTGTTTGGGACGATGACTCAAAGGAATATCAAACCAGATATCGTGGCATACAATACATTGA TTGATGGGTTTTGCAAGGTGGGTGAAATGGAGAAAGCCAGTGAGTTATGGGATGGTATGATCTCTAGGAAGATTTTCCCCAACCACATTACATACGGCAT ATTAATAAACGCGTATTGTAGTGTGGGCCATGTATCCGAGGCCTTTAGATTGTGGGATGTGATGATTGAAAAGGGTATTAAACCCACCCTTGTCACTTGT AACACTGTTATAAAAGGCTACTGTCGGTCAGGTGATTCTTCGAAGGCTGATGAGTTCTTGGGCAGGATGATTGCTAAAGGAGTTGCTCCTGATCATATTT CGTATAACACCCTTATTAATGGTTTTGTGAGAGAAGATAATATGGACAAAGCTTTTCTTTGGATTAATAAGATGGAAAAAGAAGGTCTGTTGCCTGATAT TATCACGTATAATGTAGTTATGAATGGCTTCTGTAGGCAGGGTAGGATGCAAGAGGCTGAGCTGGTCTTACGGAAAATGATTGAGAAAGGGATAAATCCT GATAGGTCCACATACACAGCTTTGATAAATGGACACGTCACTCAGGACAACTTGAATGAGGCATTTCGATTCCATGATGAAATGCTTCAAAGAGGATTTG CCCCAGATGATGTTTTTTAA
AA sequence Show only first row Show all	>Potri.001G276500.6 pacid=42787606 polypeptide=Potri.001G276500.6.p locus=Potri.001G276500 ID=Potri.001G276500.6.v4.1 annot-version=v4.1 MDLFLLNQKHTLTILKTHKRYNFISYLLNPASKSSFRCLQTIETSQNPYKEPFSSATTLPDSLLVEKIIFNLKHGNVNSLLSYQLRLNPSVIVDVLCRCN GNLQLGQRFIDSSVLNGSNFKHSSVSLSAMVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAF RILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEE AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRN RHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH GHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINP DRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G276500 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	2.82	0.9105	Pt-CRP.3
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197800 [exp]	3.16	0.8715
AT3G50370			unknown protein		Potri.005G137700 [exp]	5.29	0.8955
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	5.65	0.8648
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	5.74	0.8833
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	10.67	0.8673
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	10.95	0.8480
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	10.95	0.8588
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	12.64	0.8643
AT5G43740			Disease resistance protein (CC...		Potri.001G432200 [exp]	13.00	0.8560

Compare expression of checked genes

Potri.001G276500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.