Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 373 / 8e-121 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G70530 366 / 3e-118 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 366 / 4e-118 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G19090 311 / 1e-97 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G21410 311 / 9e-97 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23270 307 / 1e-95 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT1G56120 312 / 4e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 308 / 1e-92 Leucine-rich repeat transmembrane protein kinase (.1) AT4G23280 298 / 4e-92 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23180 298 / 8e-92 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141300 [exp] 784 / 0 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 783 / 0 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 400 / 3e-131 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043800 [exp] 388 / 1e-126 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 384 / 4e-125 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.001G348000 [exp] 380 / 3e-123 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.007G056000 [exp] 364 / 1e-117 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.018G132900 [exp] 340 / 3e-111 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G071300 [exp] 327 / 7e-106 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010960 [exp] 680 / 0 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10009703 [exp] 677 / 0 AT1G70520 319 / 4e-100 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 398 / 2e-130 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 380 / 5e-124 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 372 / 3e-120 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 370 / 2e-119 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 363 / 6e-117 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10020688 [exp] 327 / 4e-106 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010927 [exp] 329 / 1e-105 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031401 [exp] 318 / 3e-101 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.001G276600.2 pacid=42789475 polypeptide=Potri.001G276600.2.p locus=Potri.001G276600 ID=Potri.001G276600.2.v4.1 annot-version=v4.1 ATGTTGTTTATAGTGGTGTGGTGGATGGTGGCGATCACGGGGGCTTTTTCAGACCCACAAGCCAATCTGCTAAGTGCAGGTTGCAGTCAGTACAAGGTTG ACGATGTTCCGGAATTCACAAATAACCTCAATGCTACACTGTTGGATCTTGGAGCACAACTGAACAGCAGTAAATATTTTGCAACTGCAGAGCAAGCAAG GGGTACAGCACCAGTCTTCGCCATGGTTCAGTGCAGGAAATACTTGTCAACGGCAGATTGTGTCGCGTGCTTCGCTATTGCTGCTAGACAAATCCGCAAC TGCTCTGCCGGCATCAATGGCGCTCGAGTTATCTATGATGGCTGCTTCCTCAGGTATGAGAGCACAAGTTTCTACGATCAAAGCACTCAGGATGGTCACT ACGGGGCTTGTGGGAATCAAACTGCATCTCCTGCTTATCAAGCAAGTGTGGAAAGTCTGTTATCAGATCTTCAAATTGCCTCGCCGAAGATATCAGGTTT CTTTGCAACAAGTAAGAAGGAAGTGGTTGGTGCGAATTCAGTGGTTTATGGAGTGACACAATGTGTTGAAACCATCAGTAAGGCTGGTTGCCAAGATTGC TTAACAGTGGCTTATGCTGACTTGCAGACATGTTTCCCTGATGCTGATGGCAGGTCCATCAATGTTGGGTGTTTCTTGAGGTATTCAGACACGCCTTTCT TTGCAGATAACCAACTAACTGATCTCAAGCCCTTCTTGAGAAATGGAAGTTCAAGCAAAAAGAAAGTCCTTATTGCAGGGCTTGTTGGAGGCATAGGTCT TCTGTTACTTGCTACTGCAATACTGTTTCTGTGGTTTAAATTATATAGAAAACCAAAGGCAGTTCCTAGAGTAGAAGGTGACATTTTAGGGGCGACTGAA TTGCGAGGTCCAGTGAATTACAGCTTCAAGGATTTGAAATCGGCAACAAAAAATTTCAGTGAGGAATACAAACTTGGAGAAGGAGGTTTTGGTGAAGTGT ACAAGGGTGTTTTAAAGAATGAGAGAGTAGTTGCTGTCAAGAAACTAGCTATAAGCCAGTCTCACAGGGCAAAGGAGGAGTTTGAAAAGGAAGTTAAGAT CATCAGTAATGTTCATCACAGGAATCTCATCCGACTTCTTGGATGCTGCAGCAATGGACCGGAACTACTTCTCGTGTACGAATACATGGCAAACAGCAGC CTTGATAACTTCTTATATGGTGATAAAAAAGGCTCTCTCAGCTGGAAGCAACGATTTGATATAATTCTTGGGACAGCAAGGGGACTTTCCTATTTACACG AGGATTTCCATTTGTGCATCATTCATCGAGATATTAAAGCCAGCAATATTCTTTTGGATGATGATTTCCAACCCAAAATAGCAGACTTTGGGTTGGCCAG GCTTCTTCCGGAGTCTCAGAGTCATCTTACCACCAAATTTGCTGGTACACTGGGATACACAGCACCTGAATATGCAATTTATGGACAATTATCTGAGAAA GTGGATATCTATAGCTATGGGGTTGTTGTCCTCGAAATCATGAGCGGCCAAAAATGCAGTCAAGCAAATCAAGATCCTGACTCGGACTACCTCCTCAAAC GGGCATGGAGACTGTATGAGGCTGACATGCATCTGGAATTGGTGGATGGAAGCATGAGCCCAGATGAATATGAAACAGAAGAAATGAAGAAAATCATAGA GATTGCTTTGATGTGCACTCAGTCAACAGCTTCCTTAAGGCCAACAATGTCCGAAGTAGTTGTTTTACTGAAAAGCAAGGGTTCTTCGGCGCAAAAACCA CCACCAGTAAGCCCTGCCCTCATCGAGTCCTTTCAGAAAATCCGCGCAGACACATCCACGTCCACTGGTTCCCCTATGTCTAATGCTACTGCCTCCGTCT CCCAAGTATCAGCACGCTAA
AA sequence Show only first row Show all	>Potri.001G276600.2 pacid=42789475 polypeptide=Potri.001G276600.2.p locus=Potri.001G276600 ID=Potri.001G276600.2.v4.1 annot-version=v4.1 MLFIVVWWMVAITGAFSDPQANLLSAGCSQYKVDDVPEFTNNLNATLLDLGAQLNSSKYFATAEQARGTAPVFAMVQCRKYLSTADCVACFAIAARQIRN CSAGINGARVIYDGCFLRYESTSFYDQSTQDGHYGACGNQTASPAYQASVESLLSDLQIASPKISGFFATSKKEVVGANSVVYGVTQCVETISKAGCQDC LTVAYADLQTCFPDADGRSINVGCFLRYSDTPFFADNQLTDLKPFLRNGSSSKKKVLIAGLVGGIGLLLLATAILFLWFKLYRKPKAVPRVEGDILGATE LRGPVNYSFKDLKSATKNFSEEYKLGEGGFGEVYKGVLKNERVVAVKKLAISQSHRAKEEFEKEVKIISNVHHRNLIRLLGCCSNGPELLLVYEYMANSS LDNFLYGDKKGSLSWKQRFDIILGTARGLSYLHEDFHLCIIHRDIKASNILLDDDFQPKIADFGLARLLPESQSHLTTKFAGTLGYTAPEYAIYGQLSEK VDIYSYGVVVLEIMSGQKCSQANQDPDSDYLLKRAWRLYEADMHLELVDGSMSPDEYETEEMKKIIEIALMCTQSTASLRPTMSEVVVLLKSKGSSAQKP PPVSPALIESFQKIRADTSTSTGSPMSNATASVSQVSAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	0	1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	1.00	0.9262	PtrMTP2,Pt-MTP1.2
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	1.41	0.8835
AT4G10780			LRR and NB-ARC domains-contain...		Potri.018G145568 [exp]	2.44	0.8776
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	4.89	0.8526
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	6.48	0.8493
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	7.14	0.8292
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	8.48	0.8403
AT5G50760			SAUR-like auxin-responsive pro...		Potri.003G167400 [exp]	9.89	0.8339	SAUR1
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G075400 [exp]	11.48	0.8209
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	11.61	0.8439

Compare expression of checked genes

Potri.001G276600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.