Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03120 550 / 0 ATSPP signal peptide peptidase (.1) AT4G33410 101 / 3e-24 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT1G01650 93 / 7e-21 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 93 / 1e-20 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G05820 89 / 2e-19 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT2G43070 89 / 2e-19 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071600 [exp] 642 / 0 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.015G145600 [exp] 108 / 2e-26 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.012G142400 [exp] 106 / 6e-26 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.002G232200 [exp] 99 / 7e-23 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 99 / 1e-22 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.003G128500 [exp] 98 / 2e-22 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 97 / 5e-22 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 94 / 5e-21 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 92 / 3e-20 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037594 [exp] 548 / 0 AT2G03120 535 / 0.0 signal peptide peptidase (.1) Lus10006852 [exp] 546 / 0 AT2G03120 537 / 0.0 signal peptide peptidase (.1) Lus10039239 [exp] 104 / 5e-25 AT4G33410 631 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Lus10001154 [exp] 105 / 6e-25 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10027484 [exp] 102 / 6e-25 AT4G33410 512 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Lus10024653 [exp] 96 / 1e-21 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10031104 [exp] 96 / 1e-21 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 94 / 6e-21 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10032285 [exp] 94 / 8e-21 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 92 / 2e-20 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [poplar] [flax] Peptidase_AD PF04258 [poplar] [flax] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Potri.001G276700.2 pacid=42792981 polypeptide=Potri.001G276700.2.p locus=Potri.001G276700 ID=Potri.001G276700.2.v4.1 annot-version=v4.1 ATGAAGAATTGCGAAAGAATTGCCAATTTTGCTTTAGCAGGTTTAACATTGGCACCACTTTTTGTGAAGGTAGATCCAAACTTAAATGTGATCTTGACTG CATGCCTGGCAGTTTATGTCGGTTGCTATCGATCTGTCAAGCCTACCCCACCTTCAGAGACCATGTCTAATGAACATGCAATGCGCTTTCCCTTTGTCGG AAGTGCTATGCTGTTATCATTATTCTTACTCTTCAAGTTTCTTTCAAAAGATTTGGTTAATGCTGTTCTGACTTGTTACTTTTTTGTGCTTGGAATCGTC GCACTTTCGGCAACACTTTTACCAGCTATAAAACGTTATTTGCCTAAGCATTGGAATGATGATGTCATTTCTTGGAATTTTCCATACTTCCGTTCTTTGG ATATTGAGTTCACAAGATCTCAAATTGTTGCGGCTATTCCTGGAACATTCTTTTGTGCTTGGTATGCTTCCCAAAAGCATTGGCTGGCCAACAATATTTT GGGCTTGGCTTTCTGTATCCAGGGGATTGAAATGCTTTCCCTTGGTTCTTTTAAGACTGGTGCCATCCTCTTGGCTGGACTTTTTGTATATGACATTTTC TGGGTTTTCTTCACTCCTGTGATGGTTAGCGTGGCAAAATCTTTTGATGCACCTATTAAGCTTTTGTTCCCCACAGCTGATGCTGCGAGACCATTTTCCA TGCTTGGACTTGGTGACATTGTGATTCCTGGTATTTTTGTAGCTCTGGCATTGCGATTTGATGTGTCCAGGGGAAAAGACAGCCAGTACTTTAAGAGTGC TTTTCTTGGATATGCAGCTGGTTTGGTCCTTACAATTATTGTCATGAACTGGTTCCAAGCTGCTCAGCCTGCGCTTTTGTATATTGTACCAGCTGTTATA GGATTCTTAGCTGCTCACGTCCTATGGAATGGGGAAGTCAAGCCATTAATGGAGTTTGATGAGTCCAAGACTGCTGTGTCATCTCAAGAAGATAGTGGAA CCAGCTCTAGCAAAAAGGTGGAATGA
AA sequence Show only first row Show all	>Potri.001G276700.2 pacid=42792981 polypeptide=Potri.001G276700.2.p locus=Potri.001G276700 ID=Potri.001G276700.2.v4.1 annot-version=v4.1 MKNCERIANFALAGLTLAPLFVKVDPNLNVILTACLAVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIV ALSATLLPAIKRYLPKHWNDDVISWNFPYFRSLDIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIF WVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDIVIPGIFVALALRFDVSRGKDSQYFKSAFLGYAAGLVLTIIVMNWFQAAQPALLYIVPAVI GFLAAHVLWNGEVKPLMEFDESKTAVSSQEDSGTSSSKKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	1.41	0.9443	RPT4.1
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.009G071600 [exp]	2.82	0.9216
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	3.46	0.9092	TIF4.1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	4.89	0.9172
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	7.41	0.9119	PtrPht3-2
AT1G65270			unknown protein		Potri.019G055100 [exp]	7.74	0.9177
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	7.74	0.8973	Pt-I.1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	8.83	0.8960	RPT1.3
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	10.00	0.9015	PBF1.2
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.010G216600 [exp]	11.74	0.8841

Compare expression of checked genes

Potri.001G276700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.