Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03250 275 / 2e-86 HD Homeodomain-like superfamily protein (.1) AT1G28420 72 / 7e-13 HD HB-1 homeobox-1 (.1) AT5G44180 61 / 1e-09 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 50 / 5e-06 Homeodomain-like transcriptional regulator (.1) AT1G17920 45 / 0.0001 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G00730 43 / 0.0005 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G25530 42 / 0.0009 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071700 [exp] 828 / 0 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.004G048675 [exp] 74 / 2e-13 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 71 / 2e-12 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 64 / 3e-10 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 62 / 1e-09 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.015G141800 [exp] 49 / 1e-05 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 49 / 1e-05 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.001G298400 [exp] 42 / 0.001 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025454 [exp] 71 / 2e-12 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10015325 [exp] 69 / 6e-12 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10015400 [exp] 66 / 8e-12 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 64 / 3e-11 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10033644 [exp] 64 / 5e-11 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10017688 [exp] 64 / 7e-11 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10039870 [exp] 65 / 1e-10 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 64 / 3e-10 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10036709 [exp] 44 / 0.0002 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10027633 [exp] 42 / 0.0003 AT4G37790 138 / 3e-40 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.001G276800.2 pacid=42788360 polypeptide=Potri.001G276800.2.p locus=Potri.001G276800 ID=Potri.001G276800.2.v4.1 annot-version=v4.1 ATGGAAGAATCAAGTGAAGTGCATTCTGAAGAGAATAGAGTTTCTCTAGAGAAGAATTTAAAAAGGACAGTCAAGACGCCAGCCCAGGTTATTGCTTTGG AGAGCTTTTATAATGAGCACAAATATCCTACGGAGGAAATGAAATCAGAACTTGCAGACCGAATTGGGTTGACAGAAAAGCAAATATCTAGCTGGTTTTG CCACAGAAGGTTAAAAGACAAAAGATTGAAGGATGAAGGATACACTAATGGACGACAAGATCGGTCTAGCAGTATTCTTCATGATCGTGGTAGTGGATTG AGGCAAGATTCATGTGGCAGTACTAAACAAGGTGATTATAGGAATATCGATCCAAGGGAAGTTGAAAGCCAGAGACTTTATGGTCAAGATTTTCATACTG CTGATCTAACGTATGACCGTACAAGTCGCTATACAGGGAATGTTAGCGGCATTGATGATATATCTTCAGGAAGTAGCTCATCGTTGCAAGATAAGTTTGT TTCTCAAAGAGAGGATCCTTATGATACAGAAACCTCAAAGTACCTAGCACAGAATGGAGCTTCCATGCCATTAATTCCCAAGGGTGCTGAGAGTTTTGGG TATAAACCATCAGGATATTTGAAAGTGAAGGGCGAAATTGAGAATGCTGCTATTACCGCTGTCAAGATGCAATTGGGCAGGCATTATAAGGAGGATGGTC CACCTCTTGGTGTTGACTTCCAGTCACTCCCTCCTAGTGCATTTGCATCCCCAAGTAGAGATCCAGTCAATGGACCAATCTATGTAGGAGATCTTGTTGG GATGCGTTCTCCTGATGTTTCTGGAGTTCGAAAGCAACCCAGTCTCAGTGGTAGATATGAAGTATATAGCACCAAGATGAGTTCTCATGATTCATATACG GAGGGAGCAAATTGTAATCCCGAGCATGGATCCGATTCTCATGAGAGAAAATCCCGTCACCATCTAGAACAGAAGTCTACCTATAATGTTTCCAATTCTA ATGCAGGCGGGAACTCTACCATGGATATGCCTGATGATCTTGCTGTTGAAACGTCAGTCTATAGAAGCAAAAGAAATTATAGGACGAGCTCTAAGCATGA TTTTGAAGGGAGAAGATCAGATTCTTTTGCAACCCATCATGGCCCTCGTGGTAGGAGAGAAAAGACAGAAGCTTGGTTGCATGATTGTGATAATGACAAT CCTAAGATAGCTCGAAGGAATGACTACATGTCTAAGCCTTCACACTCGATTCTTGGACCTGGAAAATCTCTTGTTACAGAGGAGAGAGCACCATTTACAA AGACGGAAAAGGAGGAAAAGCTTTATGGAGAAATGAAGAGAATGAAAGGCTCGCATGATTCAGTTAGAGTAAAGAGGCATCCGAGAGATGAAACAGCTGT TGCAAAAAGATTCAGAGCTGACTTTCCACGTCAAGAACATGTGACAAAAGCATCAGTTTCTGGTATGCGCCGAAGAACAAATCTGACTGAAGGGTCTGTC ATGGAGAGGCCATCTAGTTTCAGCGAGGATGAAACTGCAGAAACCAGTTCTTCAGCAGAATGA
AA sequence Show only first row Show all	>Potri.001G276800.2 pacid=42788360 polypeptide=Potri.001G276800.2.p locus=Potri.001G276800 ID=Potri.001G276800.2.v4.1 annot-version=v4.1 MEESSEVHSEENRVSLEKNLKRTVKTPAQVIALESFYNEHKYPTEEMKSELADRIGLTEKQISSWFCHRRLKDKRLKDEGYTNGRQDRSSSILHDRGSGL RQDSCGSTKQGDYRNIDPREVESQRLYGQDFHTADLTYDRTSRYTGNVSGIDDISSGSSSSLQDKFVSQREDPYDTETSKYLAQNGASMPLIPKGAESFG YKPSGYLKVKGEIENAAITAVKMQLGRHYKEDGPPLGVDFQSLPPSAFASPSRDPVNGPIYVGDLVGMRSPDVSGVRKQPSLSGRYEVYSTKMSSHDSYT EGANCNPEHGSDSHERKSRHHLEQKSTYNVSNSNAGGNSTMDMPDDLAVETSVYRSKRNYRTSSKHDFEGRRSDSFATHHGPRGRREKTEAWLHDCDNDN PKIARRNDYMSKPSHSILGPGKSLVTEERAPFTKTEKEEKLYGEMKRMKGSHDSVRVKRHPRDETAVAKRFRADFPRQEHVTKASVSGMRRRTNLTEGSV MERPSSFSEDETAETSSSAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	3.16	0.8218
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	5.29	0.7769
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	7.07	0.7746
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	8.71	0.7862
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	13.96	0.7822
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	14.66	0.7107	Pt-CUL1.3
AT2G33360			Protein of unknown function (D...		Potri.008G171400 [exp]	15.16	0.7078
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G184800 [exp]	17.20	0.7609
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	21.33	0.7652
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	22.13	0.7178

Compare expression of checked genes

Potri.001G276800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.