Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 1482 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 1459 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 934 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 914 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 897 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 806 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 779 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 714 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 475 / 3e-150 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 186 / 8e-51 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071800 [exp] 1780 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 1322 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1308 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1306 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 847 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 845 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 802 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 722 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 588 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036030 [exp] 1585 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 1497 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1224 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1142 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 941 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 931 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 916 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 894 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 889 / 0 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 875 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain CL0266 [poplar] [flax] PH PF16457 [poplar] [flax] PH_12 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.001G276900.4 pacid=42789646 polypeptide=Potri.001G276900.4.p locus=Potri.001G276900 ID=Potri.001G276900.4.v4.1 annot-version=v4.1 ATGTTAAGGAGTGATAGAATGGCTTCGGATCTTAGTAGAACTGGACCTGTTGAAAGAGACATGGAGCAGCAGGCCATCACAGCTTTGAAGAAAGGGGCTT ACCTGCTCAAGTATGGAAGAAGGGGAAAGCCAAAGTTCTGTCCATTTCGTCTCTCCAATGATGAATCTGTTTTAATATGGTTCTCTGGGAAAGAGGAGAA ACATCTCAGACTAAGCCATGTATCTAGAATCATATCTGGGCAGCGCACACCAATCTTTCAAAGGTATCCACGCCCTGAGAAGGAGTATCAGTCATTTTCT CTTATCTATAATGATAGGTCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTTAGTGGTTTAAAAGCATTAATTTCACGAAGTCATC ACCGAAAATCGAGAACGGAATCGAGGAGCGATGGAATTCTGTCTGAGGTTAACAGCCCTAGGACTTATACTCGCAGAAGCTCTCCCTTGAATTCTCCATT TGGTAGCAATGACAGTTTGCAGAAGGACGCAGACCACCTTCGCATTCATAGTCCATATGAAAGTCCCCCCAAGAATGGTTTGGATAAAACATTTTCAGAT GTGGTATTATATGCTGTTCCTCCAAAAGGTTTTTTCCCCTCAGACTCTGCTAGTGGTTCTGTACATTCTTTATCATCTGGAGGCTCGGACAGTGTACATG GTCATATGAAGGCAGTGGCAATGGATGCTTTTAGAGTTAGCCTATCAAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGAGGCGAT GGGGGATGTTTTCATTTGGGGTGAAGGGACGGGGGATGGTGTACTAGGTGGTGGAACACATAGAGTTGGAAGTTTTTTTGGTGTAAAAATGGATTCTTTG TTGCCTAAAGCCCTGGAATCTGCAGTAGTACTTGATGTCCAGAACATTGCCTGTGGTGGACAACATGCAGCCTTAGTGACCAAGCAAGGAGAGATTTTCT CATGGGGTGAGGAATCTGGCGGCAGGCTTGGGCACGGTGTGGACTCTGATGTTTTGCATCCCCAGCTTATTGAGGCCCTCAGTAATACAAATATTGAGTT CGTAGCATGTGGGGAGTACCATACATGTGCTGTAACACTTTCTGGTGATCTGTACACATGGGGTGATGGAACATATAATTTTGGTCTTCTTGGACATGGA AATGAAGTAAGTCACTGGGTCCCAAAAAGAGTGAATGGGCCCTTGGAAGGCATACATGTGTCATCCATCTCTTGTGGACCCTGGCATACAGCAGTTGTGA GCTCTGCTGGGCAACTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGTCATGGAGATCGAAAAAGCATTTCATTACCAAGGGAAGTGGAATCTCT TAAGGGGCTCCGCACTGTCCAGGCTGCCTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCA GGGAAACTGTTTACCTGGGGTGATGGAGATAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAGTTGGTTCCTACATGTGTTTCTGCTCTTGTTGAAC CCAATTTTTGCCAAGTTGCATGTGGACATAGTCTGACAATTGCACGTACAACATCTGGTCATGTGTACACAATGGGCAGTCCTGTTTATGGTCAGTTGGG CAACCCACAATCTGATGGAAAGCTCCCAGCTCGTGTTGAAGGAAAACTCTCCAGGAGTTCTGTTGAAGAGATTGCTTGTGGTGCTTATCATGTTGCAGTT TTAACTTCAAAAACTGAAGTTTACACCTGGGGCAAGGGAGCAAATGGAAGACTCGGTCATGGGGATACAGATGATAAAAATTTGCCATCTTTAGTGGAAG CCCTAAAAGACAAACAAGTAAAGAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGTGTTGATCAGTCTATGTG TTCTGGCTGCCGCCTACCACTTAATTTCAAAAGGAAGCGGCATAATTGTTATAATTGTGGACTAGTTTATTGTCATTCATGCAGCAGCAAGAAGTCTCTC AAGGCTTCAATGGCACCAAATCCAAACAAAGCTTATCGTGTCTGTGATAATTGCTATAACAAACTAAGAAAAGCAATGGAGACTGATGCTTCTTCTCAGT CTTCTGTGAGTAGGAGAGGCAGTGTCAATCAAGGGCCAAGCGAGTTTATTGATAAAGATGAGAAGTTGGACACCAGATCTCGTGCACAACTTGCTAGATT TTCATCAATGGAATCCTTGAAGCAAGCAGAAAGCCGGTCTAAGAGAAACAAAAAACTTGAATTCAATAGTAGCAGGGTTTCACCTGTTCCAAATGGAGGC TCCCAGTGGGGAGCGTTTAATATTTCTAAATCTTTCAACCCAATGTTTGCTTCATCCAAGAAGTTTTTTTCTGCTTCTGTTCCTGGATCAAGAATTATTT CTCGAGCAACATCACCAATATCAAGACGACCTAGCCCCCCTCGATCAACAACGCCAACCCCAACCCTGGGTGGACTTACCTCACCAAAAATTGTCGTTGA TGATGCTAAGAGAACAAACGAAAGCCTTAGCCAAGAGGTTCTTAAATTAAGAGCACAGGTGGAAAATCTTAGTCACAAAACCCAGCTTCAAGAAGTTGAG CTGGAAAGAATAACCGAACGGCTGAAGGAAGCAAGAGCCATTGCTGGAGAAGAGACTGCTAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTG CTCAATTAAAAGACATGGCTGAAAGGCTACCTGTGGGAGCAGCCCGGAGCATCAAATCACCTTTGTTTGCTTCGTTTGGCTCCAGTCCTACTTCCAACGA TGTTTCTACTATTGACTGTTTGAATGGTCAAAGCACATGCCAAGAACCAGACGCAAATGGATTGCATAGCCAGTTGCTTTCTAATGTTTCAAGCACCATC AGTAACCGCGGTGCAGGTCACAACAATCAAGGCCACTTGGAAGCAACAATTAAAAATGGAAGCAGAAACAAAGAAGCTGAATGGCGTCATGAAGCTGAAT GGGTTGAGCAAGATGAGCCCGGTGTATATATAACACTAACCTCCCTACCTGGAGGCATCAAGGATCTTAAGCGAGTGCGCTTCAGGTGCGTTGTTTTCAA GCCAGTTTGGCTATCCAAATCATACCCACATTTCTCTGGTCAATTAGATTGTATAGTCAGTGGTTGCATTACCAGGCTGACGCTTCTAATAGCATATTGC CCATGTGTCTCCGTTACCTTTTAA
AA sequence Show only first row Show all	>Potri.001G276900.4 pacid=42789646 polypeptide=Potri.001G276900.4.p locus=Potri.001G276900 ID=Potri.001G276900.4.v4.1 annot-version=v4.1 MLRSDRMASDLSRTGPVERDMEQQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLRLSHVSRIISGQRTPIFQRYPRPEKEYQSFS LIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKSRTESRSDGILSEVNSPRTYTRRSSPLNSPFGSNDSLQKDADHLRIHSPYESPPKNGLDKTFSD VVLYAVPPKGFFPSDSASGSVHSLSSGGSDSVHGHMKAVAMDAFRVSLSSAVSSSSQGSGHDDGEAMGDVFIWGEGTGDGVLGGGTHRVGSFFGVKMDSL LPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPQLIEALSNTNIEFVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHG NEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVSSAGQLFTFGDGTFGVLGHGDRKSISLPREVESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSS GKLFTWGDGDKGRLGHGDKEAKLVPTCVSALVEPNFCQVACGHSLTIARTTSGHVYTMGSPVYGQLGNPQSDGKLPARVEGKLSRSSVEEIACGAYHVAV LTSKTEVYTWGKGANGRLGHGDTDDKNLPSLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPLNFKRKRHNCYNCGLVYCHSCSSKKSL KASMAPNPNKAYRVCDNCYNKLRKAMETDASSQSSVSRRGSVNQGPSEFIDKDEKLDTRSRAQLARFSSMESLKQAESRSKRNKKLEFNSSRVSPVPNGG SQWGAFNISKSFNPMFASSKKFFSASVPGSRIISRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNESLSQEVLKLRAQVENLSHKTQLQEVE LERITERLKEARAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARSIKSPLFASFGSSPTSNDVSTIDCLNGQSTCQEPDANGLHSQLLSNVSSTI SNRGAGHNNQGHLEATIKNGSRNKEAEWRHEAEWVEQDEPGVYITLTSLPGGIKDLKRVRFRCVVFKPVWLSKSYPHFSGQLDCIVSGCITRLTLLIAYC PCVSVTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	0	1
AT1G51580			RNA-binding KH domain-containi...		Potri.010G251700 [exp]	1.00	0.8688
AT5G09540			Chaperone DnaJ-domain superfam...		Potri.007G114800 [exp]	1.41	0.8556
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	3.46	0.8231
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	4.89	0.7625
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	6.92	0.8080
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.003G105000 [exp]	7.48	0.7768
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	10.09	0.7901
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	18.76	0.7629	Pt-GL3.2
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	21.35	0.7536
AT2G28940			Protein kinase superfamily pro...		Potri.009G031500 [exp]	22.00	0.6741

Compare expression of checked genes

Potri.001G276900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.