Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14590 534 / 0 EMB2739 embryo defective 2739 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036025 [exp] 998 / 0 AT4G14590 487 / 2e-162 embryo defective 2739 (.1) Lus10015604 [exp] 636 / 0 AT4G14590 496 / 3e-172 embryo defective 2739 (.1) Lus10009705 [exp] 281 / 1e-86 AT4G14590 214 / 7e-66 embryo defective 2739 (.1) Lus10032903 [exp] 100 / 2e-23 AT4G14590 79 / 1e-16 embryo defective 2739 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10189 [poplar] [flax] Ints3 Integrator complex subunit 3
Representative CDS sequence Show only first row Show all	>Potri.001G277200.2 pacid=42789101 polypeptide=Potri.001G277200.2.p locus=Potri.001G277200 ID=Potri.001G277200.2.v4.1 annot-version=v4.1 ATGGCATCAAAGCTGCTTAAACTCACTGCCTATGAGGCCAAAAACGAGCTTGAACTCTCTCTAAAGCAAGCCTTCGAGGAGCTTGAACCAAAACTAAGAC CCCCATTTCCATTAACAATACCAAGCCCTCAAGAATATTCCAGACTCAATCTTGCTATTCTTTATGGGGTTTTAACCGAACCCCATTTAGCTAAAACGCA TATAAAGCATCTTCATGCTATTGTCACTGATGGGTATGCTTTGTTTGTTAGTTTGATTGTGAAAATTGTTAATGATTTGTATGGCAAGTTAGTTGATTCG GTGAAGGATCAATTGGTTTGGGTTGTTAAAGAAATGGTTGATGTTTTAGGAGTGGGATTTGATGGTTTCTTAGTGTGTTTGTTGAGGCAGATTGTTGGTG GGGATTTTAGTGATGGGAATTTGTGGTTGTGCTTTGAGTTGGTCTCCCTTTTTTCAAGCAAATGGGATTGTTTAGTAGAAGATGCGCCATTTGTTTTAAC TAGTGCTTTGTATGTGTATCTACGGGTATTAGCTGATCATTGTAAGGTATCGACTGATGCTAAGATGGAATCGTTGAAAAGATTAGAGATTGAGTTTTGT GTCAAGATGTTGAGGGAGCAATTTAATTTGTGCATGAAGATTGGGAGGGACCTTATTAGATTGCTTCGAGATTTGGTTCATGTCCCTGAGTTTCGAGCTA TCTGGAATGATTTGGTGTTGAACCCAAGTGAATTTAGGACAGAAGGATTTTCAGATATTTCACAGTTGTACTGCTCTAGGACTTCTAGTCGGTATTTTTT GCTTCGAATTACTCCAGAGATGGAAACCCAATTGAGGTTTCTACTCATGCATGTGAAGTTTGGGAATCAGAAGCGATACCAAGTGTGGTTTGCCAAGAAG TTTCTTTTTGGACAAGAGAGAGAGACACTTGTAGTTGACATTATTCGCTTCATATGTTGTGCACACCACCCATCAAATGAAATTATTCAGTCAGACATTG TACCAAGATGGGCTGTTATAGGTTGGCTTCTAAAATCTTGTAGAGAAAAATATGTTGAAGCTAATATGAAGCTGGCCTTATTTTATGACTGGCTTTTTTT TGATGAAAAAATTGACAACATAATGAACATTGAGCCTGCAATGCTATTAATGGTATGCTCAATACCAAAATATATAGATATAACTCACTCTCTTCTTGAA TTTTTATTGTTTATTGCTGAAAACTATGAAGAGGACCGTAATTATGTCATTAGAAGGGGTTTGTCATCAGCTATGAGGATGCTTGTTCAAAAAGGAGTGG TTCGGTCAATGGATATTCTGACTTCATGTGATGCACTTTCTCCTTTTCTAAGAGAGGGACTTAGGAAGTTAATATTGCGTTTGAATATTGAACGTAATGA GTTGCAACCAGCCCATCTTCCTCCTCATTCTGTGTCACGTTCGAGTTTGCAAAATGTTTCTCATCTTGCAATAACAACACCAGCTCCGGAACAACAATCT GCAAAGATTGTGGAAGTAAGGCTTAGCAAAGAACCTGCTGGTTCTTCTATTCCCATTTCAGGTGACCTGTTTACTACTTCTTGCCCATCAAATGTTACCA TTGAAAGTCAATTTGATGCTATTGAGAGCCTAGCACAAAATCTGGCAGAAGCTATGAAGAAGTCAAATAGAATGGGGCTTCAGATTTTGGAGGAAATACT TCTCTCATTTGTGAATCTTGATGGCCAAGCATCAACATGTGGTTCAACTTTCCCTGAAACTTTATCTTCAAGAATTGCAGATCAATTTGAATCCGTTGGC AATCGATTATTTGCTCCTTTTGATGTCAGCATTAGTGTTCCTTCTTCTGACAGTGGAATTCATTCGCCCACAATCTTAATTGCACGCTCCTTCATACTTT CTCAGCATGAACGGTTGCAAGAAATGCTTCTATTCTGGTCAAGGAATGGTTTTCATGTAGGAGCTCACTTACTATCTTATGCAACAAGGCTAGCTTATGA GGCATGTATATCAGATTCTTCAGGAAATGCAATCATCAACAATAATTTTTCTAAGATAAGTGACTCAGGGATGTCATTATTACTCTTTCATGTTGATGGG TATTTTTCTATTCTGAATGGAAGGAAACAAGATTTTCTCGAAGGCAGTGTTTCTACTTCTAAGATGGATAAGGAATTAGTTAATATGTTGGTAAAAAATG CTTTTGCTGCATACAAATGTTTCCTCGAACGTTCAAGAACCATCCTGCATAAAGAAGATGATTTAGCTCTGTCAAAGCTATTCATTCTAGACATAACCTC TTGTTTTCTTTGTGAAAGAAAAAAGACAAAGTTCTTCTACAGCATCTTCTGTCATCTTGCCGACTTATGTGCTGGCAACATTGATATCATCAGGTTCCTT GTGAGTCAGTTGGATCATGCTGATCTTCTTGAAATGCAGTTTGAAATTGGGCTGAAGAGATTCTTCGTGTTCGGGGAGAGCACTGAAGATATTTTTCACT TAATGAAGAACTCTCTCAGTTGGGATCCTTCAGAGCAGCACAAGCTTTGGGGCTTGATCAGATCAGAGCTTGCTGTTTCTAAGGTTCAGCTGGAGAAGAT CATTTTGAAAATTTTCTGCTCTAATGAGCTGGATGCAAATACAAGTGCCATTGCTGTGGGAGGCCTTCTTACATTGTGCATTTGCCGTGCTCCCACACCT GAGCTTGTTGGGGCAATCATGTTACTGCCTGATGATGTATTCCAGGACTTTGCTGCTACAGTTTTGGCATCATGGGTTGTCTCTAATGCCTCAAAGCTAT TTGACAGCTTGACTAAATTTTCAGAGAAATTTGACAATGAGAATGGAAATGTTGCTGGTTCAGTTGGGATTGTGATAAACCATTCTGCAATTCTCTGGTT GTTGAATTATTTTAAATCACAGGGGATGAATGGCTCCAATTTTTTAAGCACCTTTTCTGCAAGTATTTCTTGTGAAAAACCAGCATAG
AA sequence Show only first row Show all	>Potri.001G277200.2 pacid=42789101 polypeptide=Potri.001G277200.2.p locus=Potri.001G277200 ID=Potri.001G277200.2.v4.1 annot-version=v4.1 MASKLLKLTAYEAKNELELSLKQAFEELEPKLRPPFPLTIPSPQEYSRLNLAILYGVLTEPHLAKTHIKHLHAIVTDGYALFVSLIVKIVNDLYGKLVDS VKDQLVWVVKEMVDVLGVGFDGFLVCLLRQIVGGDFSDGNLWLCFELVSLFSSKWDCLVEDAPFVLTSALYVYLRVLADHCKVSTDAKMESLKRLEIEFC VKMLREQFNLCMKIGRDLIRLLRDLVHVPEFRAIWNDLVLNPSEFRTEGFSDISQLYCSRTSSRYFLLRITPEMETQLRFLLMHVKFGNQKRYQVWFAKK FLFGQERETLVVDIIRFICCAHHPSNEIIQSDIVPRWAVIGWLLKSCREKYVEANMKLALFYDWLFFDEKIDNIMNIEPAMLLMVCSIPKYIDITHSLLE FLLFIAENYEEDRNYVIRRGLSSAMRMLVQKGVVRSMDILTSCDALSPFLREGLRKLILRLNIERNELQPAHLPPHSVSRSSLQNVSHLAITTPAPEQQS AKIVEVRLSKEPAGSSIPISGDLFTTSCPSNVTIESQFDAIESLAQNLAEAMKKSNRMGLQILEEILLSFVNLDGQASTCGSTFPETLSSRIADQFESVG NRLFAPFDVSISVPSSDSGIHSPTILIARSFILSQHERLQEMLLFWSRNGFHVGAHLLSYATRLAYEACISDSSGNAIINNNFSKISDSGMSLLLFHVDG YFSILNGRKQDFLEGSVSTSKMDKELVNMLVKNAFAAYKCFLERSRTILHKEDDLALSKLFILDITSCFLCERKKTKFFYSIFCHLADLCAGNIDIIRFL VSQLDHADLLEMQFEIGLKRFFVFGESTEDIFHLMKNSLSWDPSEQHKLWGLIRSELAVSKVQLEKIILKIFCSNELDANTSAIAVGGLLTLCICRAPTP ELVGAIMLLPDDVFQDFAATVLASWVVSNASKLFDSLTKFSEKFDNENGNVAGSVGIVINHSAILWLLNYFKSQGMNGSNFLSTFSASISCEKPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14590		EMB2739	embryo defective 2739 (.1)		Potri.001G277200 [exp]	0	1
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	3.60	0.7630
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.002G199300 [exp]	5.09	0.6418
AT5G59900			Pentatricopeptide repeat (PPR)...		Potri.001G236800 [exp]	6.32	0.6962
AT3G06340			DNAJ heat shock N-terminal dom...		Potri.008G196201 [exp]	14.14	0.6450
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	15.49	0.7003
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	16.70	0.5860
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	17.32	0.6859
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	19.07	0.6848
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	20.27	0.7264
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.013G130900 [exp]	22.27	0.6364

Compare expression of checked genes

Potri.001G277200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.