Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56630 226 / 2e-71 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 221 / 2e-69 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G13140 203 / 2e-62 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT5G08250 197 / 1e-60 Cytochrome P450 superfamily protein (.1) AT4G00360 194 / 1e-58 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT3G26125 193 / 1e-58 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT2G27690 192 / 1e-58 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT1G13150 191 / 6e-58 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT5G23190 189 / 6e-57 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G24540 188 / 9e-57 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031700 [exp] 248 / 8e-80 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 238 / 7e-76 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.005G220700 [exp] 209 / 6e-65 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 206 / 9e-64 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 206 / 1e-63 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.010G050100 [exp] 206 / 1e-63 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 206 / 2e-63 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.002G042200 [exp] 205 / 3e-63 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.007G080300 [exp] 200 / 4e-61 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036024 [exp] 333 / 7e-113 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10014742 [exp] 204 / 5e-63 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 204 / 1e-62 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10043378 [exp] 194 / 3e-61 AT2G27690 341 / 1e-115 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10033852 [exp] 199 / 6e-61 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10015018 [exp] 200 / 1e-60 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 198 / 2e-60 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10014741 [exp] 197 / 4e-60 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 195 / 3e-59 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 194 / 2e-58 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G277305.1 pacid=42791157 polypeptide=Potri.001G277305.1.p locus=Potri.001G277305 ID=Potri.001G277305.1.v4.1 annot-version=v4.1 ATGGAATTTCAAGATCAAGAACATAAAAGGAAGTTCTTGAGAGACATAATCATAAGCTTTGTGCTTGCTGGCAAGGACTCAACTTCAACAGCTTTAACAT GGTTTTTTCGGTTAATTGCTGGCAACCCTCATTGTGGGTCTTTGATTTACAAAGAAATATCATCGGCCGCCCCGCTGCCCGCGGCAGATTCAAGGGCAAG GATTTTTAGCTACGAAGAGTTGAAGAATTTTCACTATTTGCACGCTGCTCTATCAGAATCAATGAGGTTGTTTCCACCTGTACCAATCAATTCAAGATCA ACGGTGGAGGATGATATATTACCAGATGGGACCTATGTTAGGAAAGGGTGGTTTGCTGATTACTCTGCTTATGCAATGGGTAGGATGGAGAAAGTGTGGG GTCCGGATTGCAGGGAGTTTAAGCCTGAGAGGTGGTTAGATAGTGATGGAGTGTATCAACCGTTTGATCAATTTAGATATCCTGTGTTTCATTGCGGTCC CAGGATGTGTTTGGGGAAGCAAATGGCTTATATCCAAATGAAGGCAATAGCTGCAGCTGTGATGCATGAGTTTGAGATCTTGCCTGTTGATGGAGGCGCC ACCGCAAAGAAAATGATGAACCCACCTTACAGATTAACCATGGTTCTCAAGATGAGAGGGGGCTTGCCTGTTAGGCTGAAGAGGAGAGTGACATCTCAAC AATGA
AA sequence Show only first row Show all	>Potri.001G277305.1 pacid=42791157 polypeptide=Potri.001G277305.1.p locus=Potri.001G277305 ID=Potri.001G277305.1.v4.1 annot-version=v4.1 MEFQDQEHKRKFLRDIIISFVLAGKDSTSTALTWFFRLIAGNPHCGSLIYKEISSAAPLPAADSRARIFSYEELKNFHYLHAALSESMRLFPPVPINSRS TVEDDILPDGTYVRKGWFADYSAYAMGRMEKVWGPDCREFKPERWLDSDGVYQPFDQFRYPVFHCGPRMCLGKQMAYIQMKAIAAAVMHEFEILPVDGGA TAKKMMNPPYRLTMVLKMRGGLPVRLKRRVTSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.001G277305 [exp]	0	1
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	5.00	0.9543
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	6.63	0.9511
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	8.48	0.9437
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	13.56	0.9404
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	14.38	0.9503	RBCMT.1
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024100 [exp]	17.32	0.9056
AT2G33180			unknown protein		Potri.001G053700 [exp]	18.43	0.9455
AT5G48830			unknown protein		Potri.002G241200 [exp]	19.18	0.9266
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	19.69	0.9459
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	22.24	0.9403

Compare expression of checked genes

Potri.001G277305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.