Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G60060 115 / 1e-28 Protein of unknown function (DUF295) (.1) AT2G17036 110 / 2e-26 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 89 / 2e-19 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT1G65770 87 / 7e-19 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT2G26160 82 / 4e-17 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 82 / 4e-17 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G25750 74 / 3e-14 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G64840 71 / 2e-13 Protein of unknown function (DUF295) (.1) AT5G55150 67 / 5e-12 Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 151 / 2e-41 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 145 / 7e-39 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 130 / 6e-34 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 116 / 5e-29 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 109 / 3e-26 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105000 [exp] 105 / 2e-25 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G014500 [exp] 85 / 7e-18 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 63 / 9e-11 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.003G127700 [exp] 52 / 4e-07 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025100 [exp] 140 / 4e-37 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 137 / 4e-36 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 116 / 1e-28 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 97 / 7e-22 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10021517 [exp] 83 / 4e-17 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10012519 [exp] 56 / 2e-08 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 54 / 5e-08 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 46 / 4e-05 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10007081 [exp] 44 / 0.0003 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1) Lus10035492 [exp] 43 / 0.0004 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.001G277400.1 pacid=42791898 polypeptide=Potri.001G277400.1.p locus=Potri.001G277400 ID=Potri.001G277400.1.v4.1 annot-version=v4.1 ATGGATTCAACCTCACCACCCCAATGGTCATCTCTTCCAAGTGATCTTTTGTTCAATATCGCCAGCATCCTCGGCACTCGCATTGATTTGCTTAGTCTCC GTGCTGTTTGCAACTCATGGCGTTCCTCTCTCTCCCTCCCTCCCAAAACTCCTCTCGTCAAACTTCCTTTTCCCATTGACCCCAATAACCCTAACCTCAA TCCTAACCGCCATGGCCACTTTGCACTTAGTGAGTCCTTCAGTTACTCTCTCGAACCCATCAACAGAGACCCAAAAAGGACTTGGCTTATCAAAATTCAA GAGTCAGAATCTGGGAATGTTATTCTCAAAGACCCACTTGCTCGACACCCAGTTGCTGGCTTAGATCGTTTGCCTAAAGTTTTGAACTTATTGGATTACA GAGTTAAGGAGATAAGCAAAGGGTATTATGTTGAGTTTGTTGAGCAAGGTAAAGCCCCTTATCCTTCTATCTTTGTTAATGAAATGAAGTCGTGTATTTC TATCAAGCAAGTTGCTGTTTCTTCGAGTTTTGACAAAATTGGTGATGATGGTTTTGTTGTTATGGTGATATATAATGGTGGAAAGCTGGCTTTGTGGAGA ATGGGAGACGATAAATGGAGTAGTGTGAATGATATTCTAGAAGGATATGTATATGATAGTGTTGCTTATAGTAATGGGAAGTTTTTTGCTATTGATGTCA ATGGATTAACAATTAGTATTGATCCAGCGAAAGCGTCGTTTGAGATCATGGAAGTTGCTCCAGCAGAACCACGGTCTGGATTTGGACACGGTGATAAGTT TAAGTACCTGGTTAAGTGGTTTTCGGATTTGTTTTTAATTGAGAAGTACCATGAAGATCTTTTTTATTGGTCGGAGTCGGATGATGAAGATGATTATCAT ATCAAATTTAAAATTTACAAGATGAATGAAGAGGAGTGTGATTGGGTTGAGATGGATGGATTGAAAGATGCTGTATTGTTTCTTGGTGATGGTTGTTCTT TCTTTGTTTGGGCTAAAGATTTTGCTTGGTGGAAAGGGAATTGTATTTGTTTTCTTAATTACTTGTTTATGGGAGCTGGTGGTGACGGCCCAGGGCCCAA GGCTGGGATTTTTGATTTTGAGGATGGTATTTCTAGGAAGTTATCCAAGTTCTCAAGTTGTTCAAAGCTTTTTTGGCCACCACCATCTTGGCTCAAGCAC TACCCCTGA
AA sequence Show only first row Show all	>Potri.001G277400.1 pacid=42791898 polypeptide=Potri.001G277400.1.p locus=Potri.001G277400 ID=Potri.001G277400.1.v4.1 annot-version=v4.1 MDSTSPPQWSSLPSDLLFNIASILGTRIDLLSLRAVCNSWRSSLSLPPKTPLVKLPFPIDPNNPNLNPNRHGHFALSESFSYSLEPINRDPKRTWLIKIQ ESESGNVILKDPLARHPVAGLDRLPKVLNLLDYRVKEISKGYYVEFVEQGKAPYPSIFVNEMKSCISIKQVAVSSSFDKIGDDGFVVMVIYNGGKLALWR MGDDKWSSVNDILEGYVYDSVAYSNGKFFAIDVNGLTISIDPAKASFEIMEVAPAEPRSGFGHGDKFKYLVKWFSDLFLIEKYHEDLFYWSESDDEDDYH IKFKIYKMNEEECDWVEMDGLKDAVLFLGDGCSFFVWAKDFAWWKGNCICFLNYLFMGAGGDGPGPKAGIFDFEDGISRKLSKFSSCSKLFWPPPSWLKH YP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17030			F-box family protein with a do...		Potri.001G277400 [exp]	0	1
AT4G14420			HR-like lesion-inducing protei...		Potri.002G040900 [exp]	2.44	0.7946
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	3.46	0.8210
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	3.74	0.7942
					Potri.010G183951 [exp]	4.00	0.8026
					Potri.001G152550 [exp]	4.47	0.7994
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	5.65	0.7820
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	6.70	0.8070
AT1G80530			Major facilitator superfamily ...		Potri.003G016725 [exp]	11.61	0.7603
					Potri.006G019550 [exp]	12.64	0.7206
					Potri.019G024466 [exp]	13.41	0.7784

Compare expression of checked genes

Potri.001G277400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.