Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12380 441 / 5e-157 ANNAT8 annexin 8 (.1) AT5G10230 314 / 8e-107 ANN7, ANNAT7 annexin 7 (.1) AT1G35720 310 / 3e-105 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10220 310 / 3e-105 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G65020 290 / 3e-97 ANNAT2 annexin 2 (.1.2) AT2G38760 254 / 4e-83 ANN3, ANNAT3 annexin 3 (.1) AT2G38750 185 / 2e-56 ANNAT4 annexin 4 (.1) AT1G68090 174 / 4e-52 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G200700 [exp] 403 / 7e-142 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.002G095600 [exp] 331 / 2e-113 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.007G092500 [exp] 306 / 2e-103 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 303 / 2e-102 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G024800 [exp] 248 / 4e-81 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.001G024900 [exp] 198 / 2e-61 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.012G041900 [exp] 196 / 1e-60 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 193 / 1e-59 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 171 / 4e-51 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019780 [exp] 354 / 1e-122 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024054 [exp] 310 / 4e-105 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10008227 [exp] 301 / 1e-101 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 298 / 1e-100 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041696 [exp] 298 / 2e-100 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10041140 [exp] 285 / 2e-95 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 279 / 4e-93 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024172 [exp] 253 / 1e-82 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10024174 [exp] 246 / 5e-80 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10039550 [exp] 232 / 4e-74 AT2G38760 323 / 2e-109 annexin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [poplar] [flax] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Potri.001G277500.1 pacid=42793401 polypeptide=Potri.001G277500.1.p locus=Potri.001G277500 ID=Potri.001G277500.1.v4.1 annot-version=v4.1 ATGGCCACAGTTGTTGCTCCCAAAGACTTTTCTCCCGTTGAAGATGCAGAAACAATCAAGAAGGCCTGTCTAGGATTGGGAACGGATGAGAAAGCCATAA TATCAGTGCTGGGGAATCGGAATTCGTTTCAAAGGAAACTTATCAGGCTAGCTTATGAAGAGATATACCATGAGGATCTAATCCATCAACTTAAATCTGA GATCTCCGGAGATTTTGAGAGAGCAATGAGCCAGTGGACCTTGGAGCCAGCTGACAGAGATGCTGTCCTTGCCAACGCGGCCTTGCAGAAATCAAAACCT GATTACAGAGTAATTGTTGAAATTGCATGTGTCGGATCACCGGAAGATCTCTTGGCGGTGAAGCGTGCCTACCGGTTTCGTTACAGGCATTCCCTCGAAG AAGATGTGGCCCTTCACACCAAGGGTGACATTCGAAAAGTCCTGGTTGCTCTCGTAAGCGCCTACAGATATGATGGCCATGAAGTTGACGAAGATTTGGC GATTTCTGAAGCTGGTCTTCTCCATGATGATGTATATGGAAAGGCTTTTAACCATGATGAATTGGTTAGGGTATTGACTACAAGGAGCAAGGCACAGCTC AATGCAACTTTCAATCGTTACCAAGACATCCATGGAAAATCCATTACCAAGGGGCTGCTGGGAGACCCCATTGATGAATATCTAGGTGCCTTGCGAACTG CAGTCCGGTGCATTCGAGATCCAAGAAAGTATTTTGTTAAGGTCTTGCGAAGGGCCGTCCATAAAGAGGACACCGATGAAGATGCTCTTAGTCGTGTGAT CGTTACGCGTGCAGAGAAAGATTTGAAGGAGATCAAGGAGCTCTACCTGAAGAGAAACAACATCTCTCTCGATCAAGCAGTAGCAGTAGACACGCATGGA GAGTACAAGGAATTCCTTCTGACCTTATTAGGGAATGAGAAGAATTGA
AA sequence Show only first row Show all	>Potri.001G277500.1 pacid=42793401 polypeptide=Potri.001G277500.1.p locus=Potri.001G277500 ID=Potri.001G277500.1.v4.1 annot-version=v4.1 MATVVAPKDFSPVEDAETIKKACLGLGTDEKAIISVLGNRNSFQRKLIRLAYEEIYHEDLIHQLKSEISGDFERAMSQWTLEPADRDAVLANAALQKSKP DYRVIVEIACVGSPEDLLAVKRAYRFRYRHSLEEDVALHTKGDIRKVLVALVSAYRYDGHEVDEDLAISEAGLLHDDVYGKAFNHDELVRVLTTRSKAQL NATFNRYQDIHGKSITKGLLGDPIDEYLGALRTAVRCIRDPRKYFVKVLRRAVHKEDTDEDALSRVIVTRAEKDLKEIKELYLKRNNISLDQAVAVDTHG EYKEFLLTLLGNEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.001G277500 [exp]	0	1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G113533 [exp]	1.00	0.9989
					Potri.018G115550 [exp]	2.00	0.9792
					Potri.002G050150 [exp]	4.24	0.9192
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.006G166100 [exp]	39.94	0.9112
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	56.78	0.8868
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011200 [exp]	70.42	0.8868
AT3G56180			Protein of unknown function (D...		Potri.010G182300 [exp]	77.14	0.8868
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	80.29	0.8868
					Potri.001G276804 [exp]	87.68	0.8868
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	89.08	0.8868

Compare expression of checked genes

Potri.001G277500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.