Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58660 313 / 1e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G47190 282 / 8e-94 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 194 / 2e-59 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 158 / 2e-45 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G43440 145 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 144 / 3e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 144 / 5e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G10490 144 / 6e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 142 / 2e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 142 / 3e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145300 [exp] 217 / 4e-68 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 204 / 3e-63 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 199 / 2e-61 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 197 / 1e-60 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 188 / 4e-57 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 187 / 5e-57 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 185 / 6e-56 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G150300 [exp] 146 / 6e-41 AT4G10500 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 145 / 2e-40 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031294 [exp] 263 / 8e-80 AT5G58520 801 / 0.0 Protein kinase superfamily protein (.1) Lus10030567 [exp] 207 / 3e-64 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 206 / 9e-64 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 202 / 3e-62 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 200 / 1e-61 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 200 / 3e-61 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 196 / 4e-60 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 195 / 1e-59 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10021002 [exp] 154 / 1e-43 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030934 [exp] 146 / 8e-41 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G278200.1 pacid=42789572 polypeptide=Potri.001G278200.1.p locus=Potri.001G278200 ID=Potri.001G278200.1.v4.1 annot-version=v4.1 ATGTCTGAAATACTAAACCTTAAATCCTACCCTCCCGTGTTTCGCCAACAATACATCGGAATCCAACAAAACTCCGGCCTTGACGATACCACCGAACAGA TTCAAGAAGTTGTTAACGATGATGCCATTCCGGTATTAGACTTTCAGTGCCTAGACCTGGGCAAGCTTCAAGAGGCTTGCGAAGATTGGGGATTGTTTCG TTTGGTCAATCATGGGATTCCTCTAACCCTTATGAGCCAGCTTAGAGACCATTCCAGAAACCTTTTTTCTCTTACTTTTGAATCAAAACAAGAACTGTTC ACTAACCCCATGTCGTATTTTTGGGGCACAACTGCCCTGACTCCAACCGGGGCAGCTCTCTCAATAGGACCACAAAACATCAACTGGGTTGAAGGTCTCA ATATCCCACTGAGTCAACTCTCTCTGTTTCAAAAAGAAAATGAAACGCTTGGTTCGTTCAGAGTTTTGTTGGAAGAGTATGGAGGGCACCTAGCTAGACT TGCAACAACCATGTTCGGAGCAATGGCCAAAAACCTCCATCTTGATCCTGAACTTTCAAAAACTTACATTTCAGAATCAACCGGATTCGTACGTGTTTAC CGATACCCTCAATGCTCTATGGAAAATGAGGCCTGGGGCATAAATGTGCACACAGACAGCTCAGTTCTGTCAATATTGAACCAAGACCAAGTGGGTGGAC TTCAGGTTCTCAAAGATGATAACTGGCTACAAGTAAAACCCATTCCTGACACACTGGTTTTCAACCTTGGAGATATGATGCAGGCCATAAGCGACGACAA ATACAAGAGTGTGAAACATAGAGTGAAGGTGAACAAGGAAAAGGAGAGATTCTCCATCTGCTACTTTGTCTTCCCCGCTGAAGGCAGTGTCATACAGAGC TCAAAGTACAGGCCTTTCACATACAGTGATTTCCAAGCACAAGTGCAACAAGACGTAAAGACACTAGGATTTAAAGTTGGGCTTGAGAGGTTCAAGGTTG CTGGTTGA
AA sequence Show only first row Show all	>Potri.001G278200.1 pacid=42789572 polypeptide=Potri.001G278200.1.p locus=Potri.001G278200 ID=Potri.001G278200.1.v4.1 annot-version=v4.1 MSEILNLKSYPPVFRQQYIGIQQNSGLDDTTEQIQEVVNDDAIPVLDFQCLDLGKLQEACEDWGLFRLVNHGIPLTLMSQLRDHSRNLFSLTFESKQELF TNPMSYFWGTTALTPTGAALSIGPQNINWVEGLNIPLSQLSLFQKENETLGSFRVLLEEYGGHLARLATTMFGAMAKNLHLDPELSKTYISESTGFVRVY RYPQCSMENEAWGINVHTDSSVLSILNQDQVGGLQVLKDDNWLQVKPIPDTLVFNLGDMMQAISDDKYKSVKHRVKVNKEKERFSICYFVFPAEGSVIQS SKYRPFTYSDFQAQVQQDVKTLGFKVGLERFKVAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	1.00	0.9563
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	1.41	0.9522	Pt-ACO1.4
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	2.44	0.9315
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.009G033900 [exp]	5.47	0.9182
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221700 [exp]	6.00	0.9275
AT5G48370			Thioesterase/thiol ester dehyd...		Potri.014G174800 [exp]	7.48	0.9258
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022600 [exp]	8.48	0.8951
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	8.77	0.9181
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	9.16	0.9165
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Potri.010G045900 [exp]	9.48	0.9207	ATTAP1.1

Compare expression of checked genes

Potri.001G278200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.