Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) AT1G07160 410 / 1e-142 Protein phosphatase 2C family protein (.1) AT2G40180 349 / 3e-118 ATHPP2C5 phosphatase 2C5 (.1) AT4G08260 251 / 1e-82 Protein phosphatase 2C family protein (.1) AT1G67820 239 / 8e-75 Protein phosphatase 2C family protein (.1) AT3G27140 221 / 2e-70 Protein phosphatase 2C family protein (.1) AT2G05050 197 / 1e-61 Protein phosphatase 2C family protein (.1) AT4G31750 186 / 9e-56 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 186 / 2e-55 Protein phosphatase 2C family protein (.1) AT1G43900 184 / 1e-54 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073000 [exp] 577 / 0 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.010G187000 [exp] 402 / 2e-139 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 385 / 2e-132 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.010G047600 [exp] 259 / 6e-83 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 257 / 7e-82 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 253 / 5e-80 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 191 / 6e-58 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 189 / 2e-57 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 184 / 1e-54 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042275 [exp] 387 / 1e-133 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 379 / 2e-130 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 238 / 1e-74 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10006222 [exp] 233 / 2e-72 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 221 / 6e-69 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 183 / 4e-55 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 182 / 6e-55 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 182 / 6e-55 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 185 / 9e-55 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 183 / 9e-55 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G278500.1 pacid=42787910 polypeptide=Potri.001G278500.1.p locus=Potri.001G278500 ID=Potri.001G278500.1.v4.1 annot-version=v4.1 ATGTCGTGCTCCGTTGCGGTGTCGAATTCTCCTGTATTTTCCCCATCAGCAAATCTCTTCTGCAGCAAAACATCGGTATCTATCCCTTCATCACCAGCAG ACACAATAGCACTAACACTGACCCATTTAAAATCAACAACACAATCTCCATCTTCTTCTTCCACTACTAATTCTTGTTCGTCTCCTTCATCCTTGTCCCC TTGCTCTCCGTTTCGGTTTCGCCTTCAAAAACCACCATCTGGGCTCAGTTCTTCTTCCTTGGCTTCGGCTTCGGCTTCGGGGTCAGCCGCGACGGTTTTG AAGAGGAAAAGACCGATGAGGCTGGATATACCGGTTGTTATGGGGTTCGGAGGAGGGCCAGCGACGTCCAGGGCAGGGGAGGAAGCGGAGGTGGAGAGAG AAGGGTATGGCTATTCGGTTTATTGTAAGAGAGGGAGGAGAGAGGCTATGGAGGATCGGTTTTCTGCTGTCGTTGACCTTGAAGGAGATCCCAAGCAGGC TTTCTTTGGTATTTTTGATGGACATGGAGGTGCTAAAGCAGCTGAATTTGCAGCTGGGAACTTAGATAAGAATATTTTAGATGAAGTTGTTAGCAGGGAT GAGAAAGAAATTGAGGATGCAGTTAAGCATGGTTATTTAAATACTGATGCCCAGTTTTTAAAAGAAGATTTAAGAGGTGGCTCCTGCTGTGTGACAGCTT TAATTAGGAAGGGGAACCTTGTTGTATCCAATGCTGGTGATTGTCGTGCTGTTATGAGTAGAGGAGGTGTTGCTGAGGCCCTTACAACCGATCACCGGCC TTCTAGGGAAGACGAGAAGGACAGAATCGAGTCAATGGGTGGCTACGTTGATTTGATACATGGAACTTGGAGAATTCAGGGCTGCTTGGCAGTGTCTAGG GGAATTGGAGATAGGGACCTTAAACAGTGGGTAATAGCTGAGCCTGACACAAAAATTGTTACAATTAAGCCCGAAGATGAGTTCTTGATTTTAGCTTCTG ATGGCTTATGGGATAAGGTTGGTAATCAAGAAGCTGTAGACCTTGCTCGCAGTTTGTGCATAGGAGTCGAGAAGGCAGACCCGTTGTCTGCCTGTAAAAA GCTTGCTGATCTCTCCGTTTCACGAGGCTCCTGTGATGATATTAGTGTGATGCTGATCCACCTGGGACGCTATGTTTGA
AA sequence Show only first row Show all	>Potri.001G278500.1 pacid=42787910 polypeptide=Potri.001G278500.1.p locus=Potri.001G278500 ID=Potri.001G278500.1.v4.1 annot-version=v4.1 MSCSVAVSNSPVFSPSANLFCSKTSVSIPSSPADTIALTLTHLKSTTQSPSSSSTTNSCSSPSSLSPCSPFRFRLQKPPSGLSSSSLASASASGSAATVL KRKRPMRLDIPVVMGFGGGPATSRAGEEAEVEREGYGYSVYCKRGRREAMEDRFSAVVDLEGDPKQAFFGIFDGHGGAKAAEFAAGNLDKNILDEVVSRD EKEIEDAVKHGYLNTDAQFLKEDLRGGSCCVTALIRKGNLVVSNAGDCRAVMSRGGVAEALTTDHRPSREDEKDRIESMGGYVDLIHGTWRIQGCLAVSR GIGDRDLKQWVIAEPDTKIVTIKPEDEFLILASDGLWDKVGNQEAVDLARSLCIGVEKADPLSACKKLADLSVSRGSCDDISVMLIHLGRYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	0	1
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	2.00	0.8493
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171500 [exp]	2.44	0.8583
AT1G07710			Ankyrin repeat family protein ...		Potri.006G214600 [exp]	2.82	0.8132
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	10.95	0.8263
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	12.40	0.8049
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	14.24	0.7791
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	14.49	0.8433
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	16.24	0.7911
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	17.20	0.8323	SYP121.2
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	21.21	0.8204

Compare expression of checked genes

Potri.001G278500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.