Plant FIBer expression Database

Potri.001G278504 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G278504.1 pacid=42792611 polypeptide=Potri.001G278504.1.p locus=Potri.001G278504 ID=Potri.001G278504.1.v4.1 annot-version=v4.1
ATGACTTGTACCGTTCCTAAAAAAGACAGAAGGAAAAGACTAGAAATCTCTCGTTCTTTGAAATCGCGGATATTTTGTGCGTTTGGCAAATTCTTCGAGG
ACCACAAATGTTATCTTCAGACATTGTTAATTTGCCAAGTGGAGTTCCAAACGAGCTCACGCAACTTGAAGCTAGCTCTTTCCTTTCATTTTAAGGCTAG
TCACCCTAGTTTCTTACCTTTTAGATCTCGAATCTCGATTAGTCTAAGCCTATTCAAGTTTACGTGGACAAAACTCAACTCAACTCTCCTCTTATTTTCT
TCACGCGTAAAGAATTTGCTCGAACCCCTCCAATTCAAACCCCTCGGCCTCCTCTCTCTTTACCGAATCCTCAACTAA
AA sequence
>Potri.001G278504.1 pacid=42792611 polypeptide=Potri.001G278504.1.p locus=Potri.001G278504 ID=Potri.001G278504.1.v4.1 annot-version=v4.1
MTCTVPKKDRRKRLEISRSLKSRIFCAFGKFFEDHKCYLQTLLICQVEFQTSSRNLKLALSFHFKASHPSFLPFRSRISISLSLFKFTWTKLNSTLLLFS
SRVKNLLEPLQFKPLGLLSLYRILN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G278504
[exp]
0 1
AT1G30260 AGL79 unknown protein Potri.004G133180
[exp]
3.16 0.9352
AT5G27280 Zim17-type zinc finger protein... Potri.005G246200
[exp]
5.91 0.9383
AT5G23240 DNAJ heat shock N-terminal dom... Potri.007G072600
[exp]
7.54 0.9350
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.019G057901
[exp]
14.24 0.9237
AT2G42760 unknown protein Potri.011G069900
[exp]
14.83 0.9157
AT1G13990 unknown protein Potri.010G164400
[exp]
21.90 0.9011
AT5G16370 AAE5 acyl activating enzyme 5 (.1) Potri.019G067800
[exp]
22.18 0.9148
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Potri.013G018400
[exp]
22.95 0.8927
AT2G23840 HNH endonuclease (.1) Potri.013G059500
[exp]
23.68 0.9152
AT3G23360 Protein phosphatase 2C family ... Potri.010G070100
[exp]
25.03 0.9019

Potri.001G278504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.