Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07150 353 / 2e-117 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 343 / 8e-114 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT2G32510 231 / 2e-71 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT5G55090 231 / 6e-71 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT1G05100 218 / 5e-67 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT4G26890 204 / 1e-60 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT3G50310 186 / 6e-55 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 182 / 3e-53 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G54960 183 / 2e-51 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 183 / 6e-51 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073200 [exp] 630 / 0 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.014G155000 [exp] 223 / 5e-69 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.004G007700 [exp] 225 / 3e-68 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 225 / 6e-68 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.003G130000 [exp] 211 / 2e-64 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.002G228200 [exp] 213 / 3e-64 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.005G139300 [exp] 200 / 6e-60 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 189 / 6e-56 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 180 / 3e-52 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035284 [exp] 219 / 3e-66 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10030042 [exp] 216 / 3e-65 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10021551 [exp] 203 / 2e-59 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10031544 [exp] 197 / 4e-57 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10022951 [exp] 189 / 1e-54 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10012668 [exp] 182 / 4e-53 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034060 [exp] 182 / 8e-51 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 183 / 9e-51 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10024645 [exp] 182 / 8e-50 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 181 / 2e-49 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G278600.1 pacid=42792223 polypeptide=Potri.001G278600.1.p locus=Potri.001G278600 ID=Potri.001G278600.1.v4.1 annot-version=v4.1 ATGTTTTCTTGGGTTAGAGGAAAGTGCATAGGCAGAGGCTCTTATGGCACCGTCAACTTGGCTTTCAACAAACAAACCGATGCGGTTTTTGCCGTGAAGA GTGCCTCTGAAGCAAATCACGTTCAAGCGTTAGACAACGAGATCAAGATTCTAAGCTCGTTGTCTTCTCCTTTTATTGTTAAATTCCTCGGCGACGACGT CTCGTTTGAAAATTCAACAACCTGCCGGAATCTTCACATGGAGTACTTGCCAGGTGGCACCCTTGCTGACCTGGCCTCATCAACTCACCGTTTGGCTGAC GTGGACGAGCAGGCTGTTCGGTCATTTACATACTGTATAGTCTCTGCTTTGAAGTACATACACTCTAGAGGCATTGTTCACTGTGATGTTAAAGGACGGA ATATTCTATTGGGTAATAATTCAGATTCCGTTAAACTAGCAGATTTCGGTTCGGCGATTGACGCTGCATGTGGGGAGCCCCTTTTGCCACGTGGAAGTCC GCTGTGGATGGCACCGGAGGTGATCAGACGCGAATACCAGGGACCGAAAAGTGATGTCTGGTCTCTGGGCTGTACAATTATCGAGATGGTCACCGGAAAG CCGGCTTGGGAGGATCGCGGGGCTGATTCGCTGAGTCTGATCGGCTTTTCAAACGAAGTGCCCGAGTTGCCGAGTAAGTTGTGTGTGCTGGGTCAGGATT TTCTGATGAAGTGTTTGAAGAGGGAGCCAAATCAGCGGTGGAGCTGTGATCAGCTACTGCAGCATCCATTCTTAGCTTCTGTGAATTCTGATTTGCTGGG GGACGAATTGTCTCCACGTTGCGTACTCGATTGGTACTTCAATTCAGATTTCGAGGAAGATAATGACGTAATGGAGCAAGGTTCGGCTTCGAGTTTTGAC AATATTGAGGTTTCGGCTAAAAATAGGATTGGTAAATTGGTGACTAGTGGAGGGGTAAATTGGGAAACAAATGATGGCTGGGCTGAGGTTAGGAGTGGTT GTGTGAAACGTGAAAGAGGCGAGGGTGATGAATCAGGGACCAGTTCGATATATTCTTCTGATTCGGCGTGGATAAGTGAGGAAGGGGGTAGGATAAAACG GAAAGTTTGTAATTTTAGTGCTGGCGAATTACACGTGAATGGCTCTAAGGGGTCGTCCTTTTGTGGAATTCATTGGCGCGGTGAGTTGTGCAGCGGAAGT GAAGCTGGTGGTGGTTCGGGTTGTCATTATGGTTCACAAAAAGCGGAGCTAGCGGTGGAGGGGTGTGATTTGGCAGGGATTTACTTCAGAATGTTGTGTA ATTTGTTGTTGTATTTACTGTGTTTCATGAGATTAATGAGATGTAAATTTATTCTTTGGTGTAAAATCTTTGTTGTTGGGTTTAATATGTGCTAG
AA sequence Show only first row Show all	>Potri.001G278600.1 pacid=42792223 polypeptide=Potri.001G278600.1.p locus=Potri.001G278600 ID=Potri.001G278600.1.v4.1 annot-version=v4.1 MFSWVRGKCIGRGSYGTVNLAFNKQTDAVFAVKSASEANHVQALDNEIKILSSLSSPFIVKFLGDDVSFENSTTCRNLHMEYLPGGTLADLASSTHRLAD VDEQAVRSFTYCIVSALKYIHSRGIVHCDVKGRNILLGNNSDSVKLADFGSAIDAACGEPLLPRGSPLWMAPEVIRREYQGPKSDVWSLGCTIIEMVTGK PAWEDRGADSLSLIGFSNEVPELPSKLCVLGQDFLMKCLKREPNQRWSCDQLLQHPFLASVNSDLLGDELSPRCVLDWYFNSDFEEDNDVMEQGSASSFD NIEVSAKNRIGKLVTSGGVNWETNDGWAEVRSGCVKRERGEGDESGTSSIYSSDSAWISEEGGRIKRKVCNFSAGELHVNGSKGSSFCGIHWRGELCSGS EAGGGSGCHYGSQKAELAVEGCDLAGIYFRMLCNLLLYLLCFMRLMRCKFILWCKIFVVGFNMC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.001G278600 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	7.54	0.7977
AT5G59080			unknown protein		Potri.009G038300 [exp]	10.24	0.7546
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065700 [exp]	12.24	0.6812
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	16.49	0.7355
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	19.74	0.7308
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	22.36	0.7761
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	26.36	0.7480
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.019G112000 [exp]	31.70	0.7078
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	33.28	0.7526
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	33.94	0.6740

Compare expression of checked genes

Potri.001G278600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.