Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11130 2981 / 0 Clathrin, heavy chain (.1) AT3G08530 2973 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073300 [exp] 3140 / 0 AT3G11130 3006 / 0.0 Clathrin, heavy chain (.1) Potri.010G186900 [exp] 3019 / 0 AT3G11130 3104 / 0.0 Clathrin, heavy chain (.1) Potri.008G070600 [exp] 3002 / 0 AT3G11130 3139 / 0.0 Clathrin, heavy chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030393 [exp] 1353 / 0 AT3G08530 1518 / 0.0 Clathrin, heavy chain (.1) Lus10028976 [exp] 1177 / 0 AT3G08530 1258 / 0.0 Clathrin, heavy chain (.1) Lus10037845 [exp] 1093 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 1031 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Potri.001G278800.2 pacid=42792253 polypeptide=Potri.001G278800.2.p locus=Potri.001G278800 ID=Potri.001G278800.2.v4.1 annot-version=v4.1 ATGGCTGCTGCCAATGCCCCAATCACCATGAAAGAGGCTTTAACGTTGCCAAGCCTCGGGATCAATCCACAGTTCATAAATTTCACCCATGTGACGATGG AATCAGAGAAGTACATCTGCATAAGAGAAACGGCGCCGCAGAACAGTGTGGTTATTGTCGATATGAGCATGCCTGCGCAGCCTCTGAGAAGGCCTATCAC GGCCGATTCCGCCTTGATGAATCCTAATTCCCGAATTCTCGCTCTCAAAGCTCAACTCCCGGGAACTACTCAGGATCATTTACAGATATTTAATATCGAA ATGAAAGCGAAAGTGAAATCACATCAAATGCCTGAGCAGGTTGTGTTTTGGAAGTGGAGTAGTGCTAACATGCTGGCCTTGGTAACACAGACTTCTGTTT ATCACTGGTCAATTGAAGGTGATTCGGAGCCTGTGAAGATGTTTGATAGGACAGCTAATCTGCAAGGTAATCAGATAATCAACTATAGATGTGATCCTTC AGAGAAGTGGTTGGTCCTCATTGGAATTGCTCAAGGTCCTCCAGAGAGGCCACAATTGGTCAAAGGGAATATGCAGCTTTTCTCTGTGGATCAGCAGCGT AGTCAGGCTCTTGAAGCACATGCAGCGTCATTTGCGGCATTTAAAGTTGCAGGAAATGATAATGCTTCAATCCTTATCTCTTTTGCATCAAGGTCATTTA ATGCTGGACAACTAACATCAAAGTTGCATGTTATTGAACTTGGTGCTGTGCCAGGCAAACCATCATTTACTAAGAAGCAAGCAGACCTGTTCTTTCCACC AGACTTCGCTGATGATTTTCCTGTGTCAATGCAGATATCCCAAAAGTATGGCTTAATATATGTGATCACAAAGCAAGGACTTCTATTTGTTTATGACCTA GAGACTGCTAGCGCGGTTTATAGAAACCGAATCAGTCCAGATCCTATATTTTTGACGACTGATGCTTCTTCAGTAGGTGGCTTCTATGCAGTCAATAGGA GAGGACAGGTTTTGCTTGCCACTGTAAATGAAGCAACACTTGTGCCTTTCGTTAGTGGCCAGTTAAACAATCTTGAACTTGCTGTTAATCTTGCAAAAAG AGGAAATCTTCCTGGTGCTGAAAATCTGGTTGTCCAGAGGTTTCAGGAGTTATTTTCTCAGGCAAAGTATAAGGAGGCTGCAGAACTTGCGGCAGAATCT CCACAAGGAATCCTGCGCACTCCTGACACTGTTGCTAAATTTCAGAGTGTTCCGGTGCAAGCTGGGCAAACACCACCATTGCTGCAGTACTTTGGAACTC TGTTGACTAGAGGAAAACTCAATGCTTTCGAGTCATTGGAATTATCACGCCTTGTTGTAAATCAGAATAAGAAAAATCTTCTGGAGAATTGGTTGGCAGA GGACAAGCTTGAATGCACTGAAGAGCTTGGAGATCTTGTGAAGACAGTTGATAATGACCTTGCATTGAAGATATATATCAAAGCTAGGGCAACTCCAAAA GTTGTTGCAGCATTTGCTGAGAGGAGGGAGTTTGACAAGATTCTTATATACTCAAAGCAGGTTGGCTATAATCCTGATTATTTGTTCCTTCTCCAAACAA TATTGCGGACAGACCCTCAGGCTGCTGTTAATTTTGCTCTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTCGATTACAACACAATAACTGATCTATT CCTTCAGAGGAATTTGATCCGTGAGGCAACAGCATTTTTGTTGGATGTTCTGAAGCCAAATTTGCCTGAGCATGGATTCCTTCAAACTAAGGTTTTGGAG ATCAATCTTGTGACATTTCCAAATGTTGCAGATGCTATATTAGCCAATGGTATGTTTAGTCATTATGATCGCCCACGGATTGGCCAACTCTGTGAAAAAG CTGGGTTGTATATTCGAGCGCTTCAGCACTATACCGAGTTGCCTGATATAAAACGTGTTATTGTGAACACACATGTTATTGAGCCTCAGGCTCTTGTTGA GTTCTTTGGCACTCTTTCTCGAGAATGGGCTCTTGAATGTATGAAAGATCTTCTTCTAGTCAACCTGAGGGGCAACCTTCAGATTATTGTGCAGACTGCC AAAGAATACTGTGAGCAATTGGGTGTGGATGCATGCATAAAGCTCTTTGAGCAGTTTAAGTCGTATGAAGGACTGTATTTCTTTTTGGGTTCATATTTGA GCTCCAGTGAGGATCCTGAAATCCACTTCAAGTACATTGAAGCGGCTGCGAAAACTGGGCAGATTAAGGAGGTAGAACGTGTGACGCGTGAATCTAACTT CTATGATCCTGAAAAGACAAAGAACTTTTTAATGGAAGCCAAACTTCCAGATGCACGTCCATTGATCAATGTTTGTGATCGTTTTGGATTTGTCCCGGAC CTTACCCATTACCTGTACGTAAACAATATGCTTCGCTATATTGAGGGTTATGTTCAAAAGGTCAATCCAGGAAATGCTCCTTTAGTTGTAGGACAACTTC TTGATGATGAATGTGCTGAAGATTTCATTAAAGGCCTTATTCTTTCAGTTCGTTCTCTTCTGCCAGTTGAGCCCTTAGTGGAGGAGTGTGAGAAAAGGAA TCGTCTCCGCTTGCTCACTCAGTTCTTGGAGCATCTAGTCAGTGAGGGAAGCCAGGATGTGCATGTTCACAATGCTCTTGGTAAAATCATTATCGACAGT GGCGACAATCCAGAGCATTTTCTTACCACCAACCCATATTACGATTCACGTGTTGTTGGTAAATATTGTGAGAAGCGGGATCCCACCCTTGCTGTTGTTG CCTACCGAAGAGGACAGTGTGATGATGAACTAATCAATGTCACAAACAAGAATTCATTGTTCAAACTGCAGGCCAGATATGTTGTAGAACGGATGGATGG TGATCTCTGGGAGAAAGTCCTTAGTCCTGATAATGAGTATAGACGGCAGCTGATTGATCAGGTTGTATCGACTGCTTTGCCTGAAAGCAAGAGTCCTGAT CAAGTTTCAGCAACTGTTAAAGCTTTCATGACAGCTGATCTTCCACATGAACTGATCGAACTTCTTGAAAAGATTGTTCTCCAAAATTCTGCTTTCAGTG GAAATTTCAATCTGCAAAACCTGCTCATCTTGACTGCCATCAAGGCTGATCCATCAAGAGTTATGGATTACATTAATAGGCTAGACAACTTTGATGGTCC TGCAATTGGGGAGGTTGCTGTGGAAGCTCAATTGTATGAAGAGGCGTTTGCCATTTTCAAGAAGTTCAATCTGAATTTTTCAGCTGTCAATGTCCTGCTG GATAATATTCGCAGCATTGATCGAGCTGTGGAGTTTGCATTCCGGGTGGAAGAAGAAGCTGTCTGGAGCCAAGTGGCCAAGGCCCAACTGCGAGAGGGAC TAGTGAGTGAAGCAATTGAGTCATTTATCCGTGCAGACGATGCTACTCAATTTTTGGAAGTCATAAAGGCTGCCGAGGATGCAGATGTATATCATGACTT GGTGAGGTACCTTCTAATGGTGAGGCAAAAGTCCAAGGAGCCCAAGGTGGATAGTGAACTCATTTATGCATATGCTAAAATTGATCAACTGGGTGAAATT GAAGAGTTCATTCTCATGCCTAATGTCGCTAATCTCCAAAATGTTGGAGATCGCTTATATGATGAAGCCCTGTACGAGGCAGCAAAGATTATATTTAGAT TTATTAGTAACTGGGCGAAGTTAGCTGTTACACATGTTAAGCTAAACGAGTTCCAAAGTGCTGTTGATGCAGCTCGAAAAGCAAACAGCTCGAAAACATG GAAAGAAGTCTGCTTTGCTTGTGTTGATGCTGAGGAATTCCGCTTGGCTCAGATATGTGGTCTCAACATCATCATACAGGTTGATGATTTGGAAGAGGTC AGTGAGTATTACCAGAACAGAGGATGCTTCAGTGAGCTCATCTCTCTAATGGAAAGTGGGCTTGGTTTGGAACGTGCGCATATGGGCATCTTCACTGAGT TGGGAGTTTTATATGCGAGATACCGCCCTGAGAAGCTTATGGAGCACATCAAATTGTTCTCAACTCGTCTCAACATCCCCAAGGTTATACGGGCTTGTGA TGAACAACAGCACTGGAAGGAACTGACTTATTTATACATCCAATATGATGAATTTGACAATGCTGCTACCACTATAATGAACCACTCTCCAGAAGCTTGG GACCACATGCAATTCAAAGATGTTGTAGTAAAAGTTGCAAATGTTGAGCTCTACTACAAGGCTGTGCACTTTTACTTGCAAGAGCATCCAGACCTAATCA ATGATCTTCTTAATGTGATTGCTCTTCGTGTTGACCATACTAGAGTGGTGGACATAATGCGAAAGGCTGGTCAGCTCCGCCTTGTTAAGCCATACATGGT TGCAGTTCAGAGCAACAATGTCTCTGCTGTAAATGAAGCACTGAATGGAATTTACATTGAGGAGGAGGACTATGACAGACTTCGTGAATCTATTGAGTTG CATGATAATTTTGACCAGATAGGTCTTGCACAGAAGATTGAGAAACACGAGCTTCTGGAGATGAGACGTGTTGCTGCTTACATATACAAGAAAGCTGGAA GGTGGAAGCAGTCAATTGCTTTGTCAAAGAAAGACAATCTTTACAAAGATTGTATGGAAACTTGTTCACAGTCTGGTGAAAGGGAACTTTCTGAGGAGTT GCTTGTCTATTTCATTGAGCAGGGAAAGAAAGAGTGCTTTGCAGCTTGCCTCTTTGTTTGTTATGATATGATCCGACCAGATGTTGCTCTTGAGCTGGCT TGGATGAACAACATGATTGATTTTGCGTTCCCATATCTCTTGCAGTTCATCCGTGAGTACACAAGCAAAGTAGATGAACTCATCAAGGAAAAACTTGAGG CTCTTAGTGAGGTGAAGGCTAAAGAGAAAGAGGAGAAGGACATGGTTGCTCAGCAGAATATGTATGCACAATTGCTGCCCCTTGCTTTGCCTGCGCCACC TATGCCTGGAATGGGTGGAGGTTTTGCACCACCTCCAATGGGTGGAATGGGAATGCCTCCAATGCCACCTTATGGCATGCCGTCCATGGCCCCCTACTGA
AA sequence Show only first row Show all	>Potri.001G278800.2 pacid=42792253 polypeptide=Potri.001G278800.2.p locus=Potri.001G278800 ID=Potri.001G278800.2.v4.1 annot-version=v4.1 MAAANAPITMKEALTLPSLGINPQFINFTHVTMESEKYICIRETAPQNSVVIVDMSMPAQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE MKAKVKSHQMPEQVVFWKWSSANMLALVTQTSVYHWSIEGDSEPVKMFDRTANLQGNQIINYRCDPSEKWLVLIGIAQGPPERPQLVKGNMQLFSVDQQR SQALEAHAASFAAFKVAGNDNASILISFASRSFNAGQLTSKLHVIELGAVPGKPSFTKKQADLFFPPDFADDFPVSMQISQKYGLIYVITKQGLLFVYDL ETASAVYRNRISPDPIFLTTDASSVGGFYAVNRRGQVLLATVNEATLVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFSQAKYKEAAELAAES PQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLVKTVDNDLALKIYIKARATPK VVAAFAERREFDKILIYSKQVGYNPDYLFLLQTILRTDPQAAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE INLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLYIRALQHYTELPDIKRVIVNTHVIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTA KEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPD LTHYLYVNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS GDNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLSPDNEYRRQLIDQVVSTALPESKSPD QVSATVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAIGEVAVEAQLYEEAFAIFKKFNLNFSAVNVLL DNIRSIDRAVEFAFRVEEEAVWSQVAKAQLREGLVSEAIESFIRADDATQFLEVIKAAEDADVYHDLVRYLLMVRQKSKEPKVDSELIYAYAKIDQLGEI EEFILMPNVANLQNVGDRLYDEALYEAAKIIFRFISNWAKLAVTHVKLNEFQSAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEV SEYYQNRGCFSELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKVIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW DHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDLLNVIALRVDHTRVVDIMRKAGQLRLVKPYMVAVQSNNVSAVNEALNGIYIEEEDYDRLRESIEL HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGERELSEELLVYFIEQGKKECFAACLFVCYDMIRPDVALELA WMNNMIDFAFPYLLQFIREYTSKVDELIKEKLEALSEVKAKEKEEKDMVAQQNMYAQLLPLALPAPPMPGMGGGFAPPPMGGMGMPPMPPYGMPSMAPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	1.41	0.9250
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	2.00	0.9257
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	2.00	0.8937
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	3.87	0.8676
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	5.09	0.8719	Pt-ECA3.3
AT5G08560			transducin family protein / WD...		Potri.002G055800 [exp]	5.38	0.8423
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	5.91	0.8867
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	6.24	0.8968
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	8.12	0.8778
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	9.79	0.8731	Pt-NSF.2

Compare expression of checked genes

Potri.001G278800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.