Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07120 440 / 2e-153 unknown protein AT4G18570 285 / 7e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 275 / 8e-84 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 242 / 3e-74 hydroxyproline-rich glycoprotein family protein (.1) AT1G61080 58 / 1e-08 Hydroxyproline-rich glycoprotein family protein (.1) AT1G11070 54 / 1e-07 unknown protein AT4G04980 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073600 [exp] 743 / 0 AT1G07120 434 / 4e-151 unknown protein Potri.004G054900 [exp] 313 / 8e-101 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G460300 [exp] 300 / 3e-94 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 291 / 2e-92 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 291 / 2e-90 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 270 / 2e-81 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G003100 [exp] 243 / 1e-74 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 81 / 3e-16 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 72 / 4e-13 AT4G04980 387 / 4e-121 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031863 [exp] 466 / 4e-163 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 326 / 2e-109 AT1G07120 267 / 3e-87 unknown protein Lus10000986 [exp] 311 / 1e-100 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 303 / 6e-97 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 301 / 6e-96 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 270 / 4e-81 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 269 / 9e-81 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10038307 [exp] 82 / 2e-16 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 72 / 3e-13 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 69 / 4e-12 AT4G04980 336 / 2e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G279000.1 pacid=42790172 polypeptide=Potri.001G279000.1.p locus=Potri.001G279000 ID=Potri.001G279000.1.v4.1 annot-version=v4.1 ATGCGATTCCAATCTCCTGTTATTGCTCCGATGAAAGCAGAACAAGAGAGGAAAATGCGAAAAGAAGAGGATGAATCATTGATCATCTACCTCAAGAAAG AAGTCGAAGCGGCTCTGCTAAGGACTGATTCACTGGAGAAAGAAAATCAGGATTTACGACAAGAAGTAGTTCGTCTAAAAGCACAAATATGTTCACTCAA AGCACACGACAATGAGAGGAAATCCATGCTTTGGAAGAAATTACAGAATCCCTTTGACAGCAGCAAAACTGAAGTATTTCTGCAGAAACAATCAGATTTT GTCAAAGTCTCAGAAAGGAGTGTGGAACATTCAAGTCCAAGACCGAGTATACAAGAACTAGCTGCGATAAAAGAGAAGCACGCTAAAGTACCAAATCCAC CACCAAGGCCTACGTATGTAGCCCCTCCATCACTCAAGGAAGCGAACGACAATAAGTTGCCACTGACATCTGCACCACCGCCTCCGCCTCCTCCACCAAA TATGTGTGCTGGGTCAAAAGCAGTGCGCCGTGTGCCAGAAGTTGTGGAGTTCTATCGTTTGCTTACAAGGAGAGATGCCCACATGGAGAACAGAACCAAT TCAGCTGCTATTCCTGTAGTCGCATTTACTCCTAACATGATTGGAGAAATTGAGAATCGCTCCAGTTATCTTTCTGCTATAAAATCGGATGTGGAAAAAC AGAAGGAATTTATCAATTTCCTAATCAAAGAAGTGGAGTCTTCAGCCTTCAAAGACATATCTGATGTGAAGGCATTTGTGAAATGGCTAGATGATGAATT ATCATCTTTGGTTGACGAGAGGGCAGTATTGAAGCATTTCCCACAATGGCCAGAACGAAAAGCAGATGCTTTGCGAGAAGCTGCTTTCAACTACCGAGAC CTAATGAACCTCGAGTCTGAAGTTTCATCATTCCAGGACAATCCAAAAGATCTTTTGACCCTAGCCCTGGGAAGAATGCAGGCATTGCAAGACAGGTTGG AGCGAAGTATTGATAATATGGAAAGGACGAGAGAGAGCATGATCAAGAGATACAGGGATTTTCAGATCCCATGGGAATGGTTACTGAACACGGGGTTGAT CGGTGAGATGAAATTAAGTTCTTTGAGGCTAGCCAAGGTTTATTTGAAAAGGATAACTAAAGAACTGCAGCTTAATGAATGCTCGGGAGAAGATAATCTC TTGCTTCAAGGAGCTAGATTTGCCTATCGTGTACACCAGTTCGCAGGTGGTTTTGATGCAGAGACCATACGTGCGTTTCAAGAGCTAAAGAAGATTGGCA TGGGTAGTCTCAAACAATAG
AA sequence Show only first row Show all	>Potri.001G279000.1 pacid=42790172 polypeptide=Potri.001G279000.1.p locus=Potri.001G279000 ID=Potri.001G279000.1.v4.1 annot-version=v4.1 MRFQSPVIAPMKAEQERKMRKEEDESLIIYLKKEVEAALLRTDSLEKENQDLRQEVVRLKAQICSLKAHDNERKSMLWKKLQNPFDSSKTEVFLQKQSDF VKVSERSVEHSSPRPSIQELAAIKEKHAKVPNPPPRPTYVAPPSLKEANDNKLPLTSAPPPPPPPPNMCAGSKAVRRVPEVVEFYRLLTRRDAHMENRTN SAAIPVVAFTPNMIGEIENRSSYLSAIKSDVEKQKEFINFLIKEVESSAFKDISDVKAFVKWLDDELSSLVDERAVLKHFPQWPERKADALREAAFNYRD LMNLESEVSSFQDNPKDLLTLALGRMQALQDRLERSIDNMERTRESMIKRYRDFQIPWEWLLNTGLIGEMKLSSLRLAKVYLKRITKELQLNECSGEDNL LLQGARFAYRVHQFAGGFDAETIRAFQELKKIGMGSLKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07120			unknown protein		Potri.001G279000 [exp]	0	1
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	2.23	0.9306
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	4.24	0.9221
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	5.83	0.9306
AT1G13900			Purple acid phosphatases super...		Potri.010G160500 [exp]	10.24	0.9012
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	10.90	0.9154
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	10.95	0.9130	FUT13.1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	11.31	0.9215	C3H1,CYP98.1
AT1G76070			unknown protein		Potri.002G016500 [exp]	12.64	0.9120
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	13.07	0.9129
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	13.26	0.9063

Compare expression of checked genes

Potri.001G279000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.