Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58580 101 / 4e-25 ATL63 TOXICOS EN LEVADURA 63 (.1) AT3G16720 97 / 1e-23 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 96 / 2e-23 RING/U-box superfamily protein (.1) AT2G20030 91 / 1e-20 RING/U-box superfamily protein (.1) AT5G05810 90 / 1e-20 ATL43 RING/U-box superfamily protein (.1) AT1G72310 89 / 1e-20 ATL3 RING/U-box superfamily protein (.1) AT5G17600 88 / 7e-20 RING/U-box superfamily protein (.1) AT4G28890 88 / 1e-19 RING/U-box superfamily protein (.1) AT2G27940 86 / 1e-19 RING/U-box superfamily protein (.1) AT3G62690 86 / 1e-19 ATL5 AtL5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073900 [exp] 330 / 6e-115 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.010G010500 [exp] 105 / 1e-26 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.008G219200 [exp] 99 / 3e-24 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.007G097500 [exp] 95 / 3e-22 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 94 / 4e-22 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 92 / 6e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 89 / 6e-21 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 87 / 1e-20 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 87 / 4e-20 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006493 [exp] 105 / 2e-26 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10037490 [exp] 105 / 6e-26 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10042277 [exp] 99 / 1e-24 AT3G16720 104 / 2e-26 TOXICOS EN LEVADURA 2 (.1) Lus10002194 [exp] 93 / 2e-22 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10012745 [exp] 94 / 4e-22 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10012975 [exp] 91 / 8e-21 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10009511 [exp] 89 / 3e-20 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10023617 [exp] 88 / 5e-20 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10011702 [exp] 88 / 7e-20 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10034953 [exp] 87 / 3e-19 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G279200.1 pacid=42792208 polypeptide=Potri.001G279200.1.p locus=Potri.001G279200 ID=Potri.001G279200.1.v4.1 annot-version=v4.1 ATGCCAAGTGCTGTCGAATCACCAGAGCACAATCCAATGAGTCATCTCATCAACAGCATATCTTCGTATGACAGCAACATAATGCTTGCTGCAGTTATAT CCCTTCTTTTAGTAATCCTCTTTGTGTTGCTTCTCCACATCTATGCCAAGTGGTTCTTGGCACAAGCTCGCCATAGAAGAAGATCAAGTTCTGTGTCTGT GTCTCACGTTCTGCGTGCTTCAAGATTCCACCATTTCCATAATTTCACTGTTGACACAACTTTCTCTACTTCCCCTTCAAAGGGTCTTGATAGATCAGTC ATTTCTTCAATTCCATTGTTTGTTTACAAAGCAGAAGAGTGTAAACAAGGCTTAGAGTGTGTCATTTGCTTAAGTCCCTTTGAGGAAAATGAGGTTGGCA AGAGCTTGACAAAGTGTGGTCATGGTTTTCATGTTGAGTGTATTGATATGTGGCTGAATTCTCACTCTAATTGTCCTGTTTGTAGAGCTCCTGCTGTGGG TGATGACAATGACATTGCTATTGATGATCTCAAGTCCACGGAGGTGAGTAGGGAGTCAACAGATGAGAGGGGCTTGAGTGATGGTGGGGCTTCTAGATTG GAAATTGTCACTGAATTTTCAAATTCTGAGAATGAGAATGGAAATGTTGCGGTAAATCGTGATTGTTTATCAGAATCACCATCTACTTCTTTGTCTTTGA GTTCTTCTTTGAAGAGAATGTGTAGGAATAGATCAGAAAGCAAGGTATTCCCATCAATTAATGCGACTGAGCTGGATGCTTGA
AA sequence Show only first row Show all	>Potri.001G279200.1 pacid=42792208 polypeptide=Potri.001G279200.1.p locus=Potri.001G279200 ID=Potri.001G279200.1.v4.1 annot-version=v4.1 MPSAVESPEHNPMSHLINSISSYDSNIMLAAVISLLLVILFVLLLHIYAKWFLAQARHRRRSSSVSVSHVLRASRFHHFHNFTVDTTFSTSPSKGLDRSV ISSIPLFVYKAEECKQGLECVICLSPFEENEVGKSLTKCGHGFHVECIDMWLNSHSNCPVCRAPAVGDDNDIAIDDLKSTEVSRESTDERGLSDGGASRL EIVTEFSNSENENGNVAVNRDCLSESPSTSLSLSSSLKRMCRNRSESKVFPSINATELDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58580		ATL63	TOXICOS EN LEVADURA 63 (.1)		Potri.001G279200 [exp]	0	1
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	16.43	0.7375
					Potri.007G145550 [exp]	19.20	0.6887
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.019G064200 [exp]	42.89	0.6672
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Potri.015G093400 [exp]	68.11	0.6631
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	82.70	0.6655
AT3G12012		CPuORF20	conserved peptide upstream ope...		Potri.016G060550 [exp]	90.41	0.6178
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	124.65	0.6299	Pt-PSCLRR52.52
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	195.19	0.6133

Compare expression of checked genes

Potri.001G279200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.