Plant FIBer expression Database

Potri.001G279800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58570 38 / 8e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G279800.1 pacid=42792794 polypeptide=Potri.001G279800.1.p locus=Potri.001G279800 ID=Potri.001G279800.1.v4.1 annot-version=v4.1
ATGAAAACTCCATGGGTATCCCCAAAACCACAATTCTCATCATCACCAGCCATGGTCCCAATTTATGCACCGCAAGAACAAAGAGAGCCTCCTTTGTCAC
ATGATAAGTATTTTGCCTTACATGGTGGAATACTGATGCTTGTTCTTGTTGGCTTCTTTTCCATCTTCCTCATATCGTTTGTACTAGTTCCTTGTCTCAA
GCGAAGTAGAACTCCTGAATCAGGAGATGATGATGATGATGAAGACTCCACCATGCAGAGAAGTTTTTGCTTTTTTCCGCCAAGGAAACGGAGGAGGATT
GCTACATGA
AA sequence
>Potri.001G279800.1 pacid=42792794 polypeptide=Potri.001G279800.1.p locus=Potri.001G279800 ID=Potri.001G279800.1.v4.1 annot-version=v4.1
MKTPWVSPKPQFSSSPAMVPIYAPQEQREPPLSHDKYFALHGGILMLVLVGFFSIFLISFVLVPCLKRSRTPESGDDDDDEDSTMQRSFCFFPPRKRRRI
AT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58570 unknown protein Potri.001G279800
[exp]
0 1
AT4G26470 Calcium-binding EF-hand family... Potri.002G126900
[exp]
2.23 0.9205
AT3G62800 DRB4 double-stranded-RNA-binding pr... Potri.019G038184
[exp]
6.92 0.8630
AT1G22030 unknown protein Potri.001G211900
[exp]
12.40 0.8684
Potri.010G007866
[exp]
14.69 0.7928
AT5G67060 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-hel... Potri.014G027300
[exp]
15.81 0.7885
AT4G34770 SAUR-like auxin-responsive pro... Potri.004G165900
[exp]
19.79 0.7887
AT5G55690 MADS MADS-box transcription factor ... Potri.002G255700
[exp]
21.90 0.7890
AT2G30540 Thioredoxin superfamily protei... Potri.002G208400
[exp]
23.55 0.8428 PtrGrx9
AT3G61172 LCR8 low-molecular-weight cysteine-... Potri.016G061600
[exp]
24.73 0.8512
Potri.012G085901
[exp]
26.55 0.8171

Potri.001G279800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.