Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58560 334 / 6e-116 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) AT5G04490 196 / 7e-62 VTE5 vitamin E pathway gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G074800 [exp] 443 / 4e-159 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 402 / 5e-144 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.010G232600 [exp] 213 / 1e-68 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.008G029000 [exp] 59 / 5e-11 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031858 [exp] 412 / 5e-148 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10031288 [exp] 381 / 2e-134 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10017447 [exp] 209 / 1e-66 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1) Lus10028835 [exp] 169 / 4e-51 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G279900.1 pacid=42792007 polypeptide=Potri.001G279900.1.p locus=Potri.001G279900 ID=Potri.001G279900.1.v4.1 annot-version=v4.1 ATGCTTCATCAGAATCCCGTTGTCTCCGATTTAATAGCCACCGGTTTATCTGGTACCATCGCCCTCTCCTTCCTTCGTTCATTTGAAGAAACTGCTAAAC GACATATCTTCGACCAGAAACTGAATAGGAAGCTTATGCATATAAGCATCGGGTTAGTTTTCATGCTGTGCTGGCCAATGTTCAGTTCTGGACACCGGGG AGCACTTCTGGCAGCTTGTATTCCTGGTCTTAATATAATACGAATGCTTCTTATTGGATCTGGAATGTGGAAAGATGAAGCCACGGTGAAATCAATGAGC AGATTTGGAGACCGCAGGGAACTTCTCAAGGGACCATTGTACTATGCCCTGACAATTACCGTGGCTTGTGCTATCTATTGGAGGACTTCCCCGGTTGCAA TTGCAGCAATATGCAACTTGTGTGCTGGAGATGGGATTGCAGATATTGTGGGAAGGCGTTTGGGAAGTCAGAAAATCCCATACAACAGAAACAAGTCTAT AGCTGGTAGTGTTGCAATGGCCCTGGCTGGTTTCTTGGCATCTCTTGGGTTTATGGTTTATTTCTCCGCATTCGGGTATGTTCAGAAAAGCTGGGAAATG ATATTGGGTTTCTTGATTGTCTCCCTTGCCTCGAGTTTTGTGGAATCACTCCCCATAAGTACAGAGCTTGATGATAACCTAACAGTTACCCTAACTTCTC TGTTGTTGGGGAACCTTGTTTTCTGA
AA sequence Show only first row Show all	>Potri.001G279900.1 pacid=42792007 polypeptide=Potri.001G279900.1.p locus=Potri.001G279900 ID=Potri.001G279900.1.v4.1 annot-version=v4.1 MLHQNPVVSDLIATGLSGTIALSFLRSFEETAKRHIFDQKLNRKLMHISIGLVFMLCWPMFSSGHRGALLAACIPGLNIIRMLLIGSGMWKDEATVKSMS RFGDRRELLKGPLYYALTITVACAIYWRTSPVAIAAICNLCAGDGIADIVGRRLGSQKIPYNRNKSIAGSVAMALAGFLASLGFMVYFSAFGYVQKSWEM ILGFLIVSLASSFVESLPISTELDDNLTVTLTSLLLGNLVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	0	1
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	3.00	0.7991
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	5.65	0.7056
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	11.18	0.7238
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.014G135540 [exp]	13.26	0.6710
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	13.78	0.7174
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	18.16	0.7237	Pt-ARF1.11
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	19.49	0.6995
AT1G28120			unknown protein		Potri.003G162600 [exp]	20.78	0.6788
AT5G42620			metalloendopeptidases;zinc ion...		Potri.014G040800 [exp]	21.93	0.6766
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G104000 [exp]	25.84	0.6238

Compare expression of checked genes

Potri.001G279900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.