Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 427 / 3e-143 Protein kinase family protein (.1.2) AT3G56050 417 / 8e-139 Protein kinase family protein (.1.2) AT4G18640 410 / 5e-134 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 405 / 5e-132 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 385 / 8e-129 Protein kinase superfamily protein (.1.2.3) AT5G07150 351 / 9e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 257 / 8e-76 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 221 / 2e-62 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G20300 158 / 3e-40 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT1G06840 157 / 8e-40 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075400 [exp] 700 / 0 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 510 / 3e-173 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 495 / 2e-167 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.004G058100 [exp] 437 / 4e-144 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 434 / 7e-143 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 256 / 1e-75 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 255 / 7e-75 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G025700 [exp] 168 / 2e-45 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 161 / 4e-43 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031290 [exp] 554 / 0 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 550 / 0 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 471 / 2e-157 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 469 / 6e-157 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 389 / 7e-129 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 375 / 6e-121 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 375 / 2e-120 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 371 / 6e-118 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 257 / 7e-76 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 252 / 7e-74 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G280200.1 pacid=42793547 polypeptide=Potri.001G280200.1.p locus=Potri.001G280200 ID=Potri.001G280200.1.v4.1 annot-version=v4.1 ATGATGGACGGGTGGTGGAGATTGAACGGTGTGAAGCTTCGCATGAAGATTTTGATGCTGGTTTTGTTGTTACTGCCGCAAAGCTTGAGCTTTTGTTGGT CTCTAAACACGGAAGGTTTGGCTTTGTTGAGGTTTAGAGAGATGGTGGAGAGAGATCCACATGGAGCTTTATCGAATTGGATTGAGAAAGATGGAGATAT TGATCCTTGTTCTTGGTTTGGTGTCGAATGCTCTGATGGCCAAGTTGTGATCTTGCATTTGACAGATCTCTGTCTTGGAGGGACACTGGCACCTGAACTT GGGAGACTAGCTTACTTAAAATCATTAAATTTACGCAACAATTCTTTCTACGGAAACATTCCTAGAGAGATTGGAGAGCTGGAGGAGCTGGAGGTGTTGG ACTTGGGATATAATAACTTTAGTGGACCATTTCCTCCTAACTTTTTTGCAAATAATCTATCACTGACTACCCTCTTGCTTGACAATAACAAGTTTCTAGA TGGCATATCTCCTGAAGTAAATGACCTCAAGGTGCTTTCTGAAGTTCAGGCAGATGAAAATCAGTTAAGAGCTTCCTGTTGCTGCAGAGACATTACCTGG AACAATGTTCAATCTAGAAATATAGCTCACCGGATGCTGCTGCAGGTGGCAGATCCTCCAAATCCACCCATAGACAACAATCGTCGTAAAACAAATCAAA GTGGTTCTGAAGCATCGCCTTCTCCATCTTTATTGTCACCATCCGGATCTCAACTATCACCATCAATGGCACCCTCAGATTCGCCGTCTTTATCACTGTC TCCATCATTCTCCCCATCACCATCCCCTTCGGAGTCTCCATCATTTTCTCCAGCAGAATCCCCCTCCAGTCTTCCTTTGCCTCCTTCACCCTCACCCATG ATTGCACCAACTCCAGCTTCACCTGCTCCAGAAAATCGACCAAATGTCTTTATTGTACAACCACAATATGATTGGGTGTCAATGGTCCCTGCTCCAAGTC CAAGTCATTTGGAGCATTCAAAGTCAAAAACTCACACTGTTCTCATTGCTGGTGTTATTGCTGGCTCGATGCTTGCTTTGATTTCAGCCGTTGGCTTTTT TCTCTTTAGAAGAAGCAAGGTAGTCACTGTCAAACCTTGGGCCACAGGTTTAAGTGGGCAGCTACAAAAGGCATTTGTAACGGGTGTACCAAAACTCAAG AGACCAGAACTTGAGGTCGCTTGTGAAGATTTCAGTAACATTATTGGCCCCTTTTCAGATGGCACAGTGTACAAGGGGACACTATCGAGTGGGGTTGAAA TAGCTGTGACATCTACTGCAGTAAAATCGCGTGAAGACTGGTCGAAAAACTTGGAAGCCCAATTCAGAAATAAGATTGACACATTATCGAAAATGAACCA CAAGAATTTTGTCAACCTTATTGGATTTTGTGAAGAAGATGAGCCTTTCACAAGAATAATGGTTTTTGAATATGCTCCAAATGGAACTCTGTTTGAACAT CTGCACGTAAAAGAAGCCGAACACTTGGACTGGGGAATGAGACTACGAATAGCAATGGGCGTGGCATATTGCCTCGAATACATGCATCAACTAACTCCAC CTGTAGCCCATAAAAACCTGCAATCATCGTCAATATATCTAACTGAAGACTATGCAGCCAAAATATCAGATTTCAGTTTCTGGAATGATGCAACAGCAGC AAAGACTGGATCACCATCCATGGAGCTTCTAGAATCACAATCATCAGATCCAGAGAGCAATATTTACAGTTTTGGGGTAATTTTGTATGAAATGATAACC GGTAGGATCCCATATGCAGTGGACAATCTTGCTGACTGGGCATCAGATTACCTGAGAGGAGAGCAACCATTAAAAGAAAAGGTGGATCCAACTCTAAAAT CTTTCCAAGAGGACGAGCTTGAGAAATTGTCTGAAGTAATAAGAAATTGCATCCATCCTGATCCAAAGCACAGACCAACGATGAAAGAGATTGCAGCCAA GTTAAAAGAGATCACATCAGTGGGACCTGATGGAGCAACACCAAAATTATCACCCCTTTGGTGGGCAGAACTTGAAATTATGTCTACAGAAGGAAGTTGC GAGGTTAACTCAGTCTGA
AA sequence Show only first row Show all	>Potri.001G280200.1 pacid=42793547 polypeptide=Potri.001G280200.1.p locus=Potri.001G280200 ID=Potri.001G280200.1.v4.1 annot-version=v4.1 MMDGWWRLNGVKLRMKILMLVLLLLPQSLSFCWSLNTEGLALLRFREMVERDPHGALSNWIEKDGDIDPCSWFGVECSDGQVVILHLTDLCLGGTLAPEL GRLAYLKSLNLRNNSFYGNIPREIGELEELEVLDLGYNNFSGPFPPNFFANNLSLTTLLLDNNKFLDGISPEVNDLKVLSEVQADENQLRASCCCRDITW NNVQSRNIAHRMLLQVADPPNPPIDNNRRKTNQSGSEASPSPSLLSPSGSQLSPSMAPSDSPSLSLSPSFSPSPSPSESPSFSPAESPSSLPLPPSPSPM IAPTPASPAPENRPNVFIVQPQYDWVSMVPAPSPSHLEHSKSKTHTVLIAGVIAGSMLALISAVGFFLFRRSKVVTVKPWATGLSGQLQKAFVTGVPKLK RPELEVACEDFSNIIGPFSDGTVYKGTLSSGVEIAVTSTAVKSREDWSKNLEAQFRNKIDTLSKMNHKNFVNLIGFCEEDEPFTRIMVFEYAPNGTLFEH LHVKEAEHLDWGMRLRIAMGVAYCLEYMHQLTPPVAHKNLQSSSIYLTEDYAAKISDFSFWNDATAAKTGSPSMELLESQSSDPESNIYSFGVILYEMIT GRIPYAVDNLADWASDYLRGEQPLKEKVDPTLKSFQEDELEKLSEVIRNCIHPDPKHRPTMKEIAAKLKEITSVGPDGATPKLSPLWWAELEIMSTEGSC EVNSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	0	1
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	1.00	0.9530
AT5G56040			Leucine-rich receptor-like pro...		Potri.012G088100 [exp]	2.44	0.8918
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	4.24	0.8940	MYB.38,MYB090
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	7.21	0.8924
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	7.93	0.8618
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	8.00	0.8961
AT5G59350			unknown protein		Potri.008G054400 [exp]	9.79	0.8739
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	10.24	0.8910
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.005G145300 [exp]	10.39	0.8800
AT1G15260			unknown protein		Potri.018G080001 [exp]	12.40	0.8740

Compare expression of checked genes

Potri.001G280200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.