Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075500 [exp] 209 / 9e-66 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.016G122500 [exp] 63 / 1e-11 AT3G03450 85 / 3e-17 RGA-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002204 [exp] 69 / 1e-13 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10040166 [exp] 69 / 2e-13 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10012236 [exp] 68 / 4e-13 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10022664 [exp] 59 / 4e-10 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10002205 [exp] 59 / 5e-10 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G280332.1 pacid=42789019 polypeptide=Potri.001G280332.1.p locus=Potri.001G280332 ID=Potri.001G280332.1.v4.1 annot-version=v4.1 ATGGCAGAGTACTTACAGTCCTATAGAAGAAGCAGGGGATTTTTTCGAAACAGAGATGGCCAATTAAGCAGCCATCCTGATCACTCTTTTTCATGTATCT CTATTGAAGATTTCTCTGACGTTTCTTCTTCTATCCCATTTTCCCCAGTTATACATGTTGATGAGCCTCCAAGTTTCCCTATTCTTGTTGACGATTCGCC CGTCACTATGTTCCGGCCAGTGGAGCAGAAATGTTCCCTAATTTCGGAGTCTGATATTACTTTAGATGACCCAGTATTGATGGTGAATGAAATTGAGGAT ATTAGCGACTGGTTGGCAAGTGAGAGCAGACTACCTGCTCTACATAACTTTCCAGGAGATGATGCAGGGAGCCTCTTGAGGGAGGTATCTATAGGCACGC TGATGAATCAAATATCCTTGATTCTGCCTGGTATTGGGATGGAATTTGATAACCAATTGAGCATTCTCCATCTGCTTAAGGCTTATGGAGAGGCTGAGGA GATGGAGACGAAAGAGTTGGCTGGAAAAATTATGAGTCAGTTAAAAGAGAAGGCTTGTCCTTTTGGTTCAACTGTCGAGCGACTTGCTTATTATATGATT CAAGCACTGGAAGGGGAAGTGGACTTTCTATGGAAATAA
AA sequence Show only first row Show all	>Potri.001G280332.1 pacid=42789019 polypeptide=Potri.001G280332.1.p locus=Potri.001G280332 ID=Potri.001G280332.1.v4.1 annot-version=v4.1 MAEYLQSYRRSRGFFRNRDGQLSSHPDHSFSCISIEDFSDVSSSIPFSPVIHVDEPPSFPILVDDSPVTMFRPVEQKCSLISESDITLDDPVLMVNEIED ISDWLASESRLPALHNFPGDDAGSLLREVSIGTLMNQISLILPGIGMEFDNQLSILHLLKAYGEAEEMETKELAGKIMSQLKEKACPFGSTVERLAYYMI QALEGEVDFLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G280332 [exp]	0	1
AT4G03150			unknown protein		Potri.014G135400 [exp]	2.82	0.7247
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	7.34	0.7199	Pt-NQR.3
					Potri.012G109000 [exp]	8.48	0.6484
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	14.73	0.6864
AT1G42960			unknown protein		Potri.007G064100 [exp]	20.88	0.7054
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086300 [exp]	26.11	0.6413
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	31.41	0.6445
AT3G29010			Biotin/lipoate A/B protein lig...		Potri.017G085100 [exp]	42.62	0.6345
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	48.00	0.6339
AT1G08220			unknown protein		Potri.009G002000 [exp]	50.11	0.6529

Compare expression of checked genes

Potri.001G280332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.