Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30105 503 / 7e-180 unknown protein AT5G07910 170 / 1e-50 Leucine-rich repeat (LRR) family protein (.1) AT5G05850 93 / 1e-20 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT4G35470 87 / 3e-18 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G11330 86 / 4e-18 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT1G12970 85 / 6e-18 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G15410 84 / 3e-17 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G17440 83 / 3e-17 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G26050 79 / 5e-16 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT3G26500 77 / 4e-15 PIRL2 plant intracellular ras group-related LRR 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048800 [exp] 181 / 1e-54 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.007G065000 [exp] 99 / 1e-22 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 97 / 7e-22 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.011G121700 [exp] 86 / 4e-18 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.015G083800 [exp] 83 / 3e-17 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.012G085600 [exp] 81 / 1e-16 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.001G144100 [exp] 81 / 2e-16 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.002G008375 [exp] 78 / 2e-15 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.003G090100 [exp] 76 / 9e-15 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031291 [exp] 471 / 7e-167 AT2G30105 444 / 2e-156 unknown protein Lus10031861 [exp] 468 / 7e-166 AT2G30105 437 / 7e-154 unknown protein Lus10021635 [exp] 174 / 5e-52 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 169 / 3e-50 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10035976 [exp] 93 / 3e-20 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 93 / 4e-20 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 89 / 3e-19 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10013689 [exp] 84 / 2e-17 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 82 / 7e-17 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10032668 [exp] 74 / 3e-15 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G280500.2 pacid=42793643 polypeptide=Potri.001G280500.2.p locus=Potri.001G280500 ID=Potri.001G280500.2.v4.1 annot-version=v4.1 ATGGAGGTGGAAGGTCAAGATACAGCGATAAACATAACAGTGAAGTTCAGTGGAAGATCCATTCCAATCTCTGTCTCTCTCGACTCCAAAATCAAAGACG TCAAATCCCTTCTGCAACCTCTCACCAACGTTCTTCCCCGTGGCCAAAAACTCATCTTTAAAGGGAAGTTGTTGGTGGATGGTATGACTTTGAGGGAATC AGAGGTCACAAATGGGGCCAAGGTCATGCTTATGGCCTCTCAGGGCTTGCACCAAGGGGATGGTCCAATACTAAAAGATGCTAAGACTCGACCGATTTCA AGGGCTAATACTAGTAGTAATAAAACGGTGAATGAAAAGATTGGAGTTTTGTTTGATAAGAACCGGGTTGAACGATGGAAGGTTACTGGAGTTATTGGAC TGGCTGAATGCAACTTAAAGGCAATACCTGAGGAAGTGTGGACATGTGGACCTTCTACAAGAGTCCTTGATATCAGCAACAATTTTATTCTAGATGTACC AGCCCAAATTGGCTGTTTAAGTTCCATGCAGAAATTTTTGCTCAATGGAAATGGTATGTTGGATGAATGCATTAAATGGAAAGGACTAACATCTTTGAAG CATTTGACAGTTCTGTCTGTCAGCCATAACAATTTATCCACCTTGCCTTCTGAATTGGGTGCTCTGTGCTCTCTGAGACAACTGCATGTTTCAAACAATA AGTTGAGTAGCCTCCCGATGGAAATTGGACTTCTCACCCAGCTTGAGGTTTTGAAAGTCAACAATAACAGAATAAGCAACGTTCCTATGTGTATAGGGGA CTGTAGTTCTCTTGCCGAGGTTGATCTTTCATCAAATCTTCTGACAGAGTTGCCTGTTACATTTGGGGATTTGCTTAATTTGAAGGCTTTACATCTAGGC AACAACGGGCTAAAATCCCTCCCTTCTACAATATTCAAGATGTGCCTGCAACTCTCAACTCTAGATCTCCACAACACAGAAATCACAATGGACGTTCTTC GTCAGCTTGAAGGATGGCAAGATTTTGATGACCGCCGTCGTTCAAAACATCAGAAGCAACTGGATTTTCGAGTTGTGGGCTCTGCTGAGTTTGATGAGGG TGCTGATAAACTTTGA
AA sequence Show only first row Show all	>Potri.001G280500.2 pacid=42793643 polypeptide=Potri.001G280500.2.p locus=Potri.001G280500 ID=Potri.001G280500.2.v4.1 annot-version=v4.1 MEVEGQDTAINITVKFSGRSIPISVSLDSKIKDVKSLLQPLTNVLPRGQKLIFKGKLLVDGMTLRESEVTNGAKVMLMASQGLHQGDGPILKDAKTRPIS RANTSSNKTVNEKIGVLFDKNRVERWKVTGVIGLAECNLKAIPEEVWTCGPSTRVLDISNNFILDVPAQIGCLSSMQKFLLNGNGMLDECIKWKGLTSLK HLTVLSVSHNNLSTLPSELGALCSLRQLHVSNNKLSSLPMEIGLLTQLEVLKVNNNRISNVPMCIGDCSSLAEVDLSSNLLTELPVTFGDLLNLKALHLG NNGLKSLPSTIFKMCLQLSTLDLHNTEITMDVLRQLEGWQDFDDRRRSKHQKQLDFRVVGSAEFDEGADKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30105			unknown protein		Potri.001G280500 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	6.55	0.7681
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	11.48	0.7423
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	14.96	0.7400
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	15.19	0.7443
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.001G126500 [exp]	22.84	0.7578
AT1G77220			Protein of unknown function (D...		Potri.005G188200 [exp]	34.32	0.6980
AT4G21865			unknown protein		Potri.010G065666 [exp]	36.46	0.7354
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G090300 [exp]	43.35	0.7398
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	55.64	0.7333
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	59.24	0.6730

Compare expression of checked genes

Potri.001G280500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.