Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATUBA1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 1751 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 1726 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G21470 127 / 8e-30 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 91 / 9e-19 ECR1 E1 C-terminal related 1 (.1) AT5G50680 76 / 2e-14 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G50580 76 / 2e-14 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT4G24940 69 / 4e-12 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT2G32410 54 / 4e-07 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 53 / 9e-07 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G05350 51 / 5e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075800 [exp] 2083 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 1969 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 126 / 1e-29 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 121 / 6e-28 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 92 / 3e-19 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 92 / 6e-19 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.012G100800 [exp] 77 / 1e-14 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 71 / 8e-13 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 71 / 2e-12 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012507 [exp] 1754 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 1704 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 1702 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 781 / 0 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022665 [exp] 774 / 0 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 126 / 2e-29 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 108 / 1e-23 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 90 / 2e-18 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 90 / 3e-18 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10008977 [exp] 74 / 1e-13 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF09358 [poplar] [flax] E1_UFD Ubiquitin fold domain CL0063 [poplar] [flax] PF10585 [poplar] [flax] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [poplar] [flax] PF16190 [poplar] [flax] E1_FCCH Ubiquitin-activating enzyme E1 FCCH domain CL0063 [poplar] [flax] PF16191 [poplar] [flax] E1_4HB Ubiquitin-activating enzyme E1 four-helix bundle
Representative CDS sequence Show only first row Show all	>Potri.001G280600.2 pacid=42789841 polypeptide=Potri.001G280600.2.p locus=Potri.001G280600 ID=Potri.001G280600.2.v4.1 annot-version=v4.1 ATGCAAAACCATAAAATACTCCTGTCTCTACCCCATCTCAACTTCAATTTCTCTAAACCCAAAATAAAAAAAATCTCTCCTTCACAGACACTCTACAAGC TACCAAAACCAAACCCCAACCCCAACCCTCCCCCCCCCCCCCCAGATTCCATCCTTCCTCACTGGGCTAAACGTTTACTATACTTTATGCTTCCTATAAA GCGACCTGTTGAAGCAGTGCTGGTTGAAGGAGAAGAAGCACCAGATAACAGCATATCAGATTCATTTTCTTTCAAAAAGAACCGGATCGATTGCTCCTTG GAATCGAACGTGTCTAGTAACAAAAACAGTTGCGTTATTGGTAATTGCAGTGACACCGACAGAGACAGTAACAACCGCTGTAAAGAGGAGTTGATTATGT CACCTGGTGATTCGAAACCGATGGAGATTGATGAGGATCTTCACAGTCGCCAGCTTGCTGTTTATGGAAGAGAGACGATGCGAAGGCTTTTTGGTTCCAA CGTTCTTGTTTCCGGGATGCATGGTCTTGGTGTTGAGATTGCAAAAAACCTCATTCTTGCTGGTGTCAAGTCTGTGACATTGCATGATGAAGGAATATTG GAGCTGTGGGATTTATCCAGTAACTTTGTTTTTTCCGAGAATGATGTTGGTAAGAACAGGGCCCTAGCATCTGTTCAGAAGTTGCAGGATCTCAACAATG CAGTCACCATCTCTACCTTAATTACAGAATTGACAACAGAACAACTTGATAAGTTCCAGGCTGTCGTATTTACAGATCTCAATCTTGACAAAGCCATTGA GTTTAACGACTACTGCCATAATCATAAGCCCCCCATCTCTTTTATCAAGGCTGAAGTTAGAGGTCTCTTTGGCTCTGTGTTTTGTGACTTTGGACCTGAA TTCACAGTGTTTGATGTTGATGGAGAGGAACCACACACTGGTATAATTGCATCTATCAGCAATGATAACCCTGCACTGGTGTCATGCGTTGATGATGAAA GGCTTGAGTTTCAAGATGGGGATCTTGTTGTTTTCTCTGAAGTGAAGGGAATGACAGAAATGAATGATGGAAAACCAAGAAAGATTAAAAATTCCAGACC ATATTCATTTAATCTCGAGGAGGACACCACAAACTTTGCTACCTATGAGAAAGGTGGGATTGTCACACAGGTGAAACAACCCAAGGTGTTGAATTTTAAG CCATTGAGAGAAGCAATTAAAGATCCCGGTGAATTTCTATTGAGTGATTTCTCCAAGTTTGACCGTCCACCTCTCTTGCACTTGGCATTTCAAGCACTGG ACAAGTTCGTGTCTGAGATGGGTCGTTTCCCTGCTGCTGGTTCAGAAGAAGATGCTCAGAAGCTTATATCTCTGGCAAGTCACATCAATGAAAACTCAGG AGATGCGAGAGTAGAGGACATTAACCCAAAACTGTTGCGGCACTTTGCCTTTGGTGCCAGGGCTGTACTGAATCCTATGGCAGCTATGTTTGGTGGTCTA GTGGGACAAGAGGTTGTCAAAGCATGTTCTGGAAAGTTTCATCCTCTCTTTCAGTTCTTCTATTTTGATTCCGTGGAATCACTTCCAACAGCAAATTTGG ATCCCAGGGACTTCAAGCCACGAAATAGCCGTTATGATGCCCAAATCTCAGTTTTTGGGTCCAAGCTTCAAAAGAAGCTAGAGGATGCTAATTTATTTGT AGTAGGATCTGGTGCGCTTGGCTGTGAATTCTTGAAAAATTTAGCACTGATGGGTGTTTCATGTGGTGAACAGGGAAAGCTGACATTAACTGATGATGAT GTGATTGAGAAGAGTAACTTGAGCAGGCAGTTTCTCTTCCGTGATTGGAACATTGGACAGGCCAAATCCACTGTTGCTGCTTCTGCTGCTGCATTAATAA ATCCTCATCTCAAGATTGAAGCACTGCAAAATCGTGTGTCCCCTGAAAGTGAGAATGTATTTGATGATACTTTCTGGGAGAACTTAACTGCTGTTGTCAA TGCTTTAGACAATGTCAATGCAAGACTTTATGTTGACCAGAGGTGCTTGTACTTCCAAAAGCCTCTTCTCGAGTCAGGAACCTTGGGTGCCAAATGCAAC ACTCAGATGATCATTCCTCACCTGACTGAAAATTATGGTGCTTCAAGGGACCCACCAGAGAAACAAGCACCTATGTGCACTGTGCATTCGTTCCCACATA ACATTGATCATTGCTTGACATGGGCTCGATCTGAGTTTGAGGGTTTGGTTGAGAAAACACCAACAGAAGTTAATGCCTATCTATCAAATCCAGTTGATTA TACTAATGCTATGACCAAAGCTGGTGATGCTCAGTCAAGGGACACCTTGGAACGTGTTCTTGAGTGCCTTGAGAAGGAAAAATGTGAGACATTCCAGGAT TGCATCACATGGGCGCGTTTAAGGTTTGAAGATTATTTTGCTGATCGGGTGAAGCAGTTGATCTTCACTTTCCCTGAAGATGCATCTACTAGTACTGGTG CTCCGTTCTGGTCAGCACCAAAGCGATTCCCTCATCCACTTCAGTTCTCAACTGCAGATCCAAGTCACCTCCATTTTGTCATGGCAGCATCAATATTGCG AGCGGAGACTTTTGGGATCTCTGTTCCTGAGTGGGTGAAACATCCTAAGACATTGGCCGAGGCTGTAGAGAAGGTGATTGTGCCAGAATTTCAACCAAGA GAAGATGTGAAAATTGAGACAGATGAAAAGGCTACCACTATATCTACTGTATCTGTAGATGATGCAGCGGTAATCAATGAACTTATCAGGAAACTAGAGC AGTGCAGGCATAAGTTGCCACCTGCATACAGGATGACCCCAATTCAGTTTGAGAAGGATGACGATACAAACTACCACATGGATCTGATAGCCGGTCTTGC CAACATGAGAGCAAGAAACTACAGCATTCCTGAGGTTGACAAACTGAAAGCCAAGTTTATTGCTGGAAGGATCATCCCTGCTATTGCAACCTCCACAGCT ATGGCCACTGGTCTTGTGTGCTTGGAGCTGTATAAGGTTCTGGATGGTGGACACAAGGTGGAGGACTACCGCAATACATTTGCCAACCTTGCACTCCCTC TATTCTCCATGGCTGAGCCTGTCCCACCCAAGGTTATCAAGCATCAGGATATGAGCTGGACAGTTTGGGACAGGTGGATTCTAAAAGACAATCCTACCTT GAGGGAACTTCTGCAATGGCTCAAGCATAAGGGGCTTGATGCCTATAGCATTTCACATGGTAGTTGCCTGCTTTACAATAGCATGTTCCCTCGGCACAGA GACAGGATGGACAGGAAGATGGTTGATCTGGTTAGGGAAGTGGCCAAAGCGGAGTTGCCTGCATATCGTCACCACTTTGATGTTGTTGTCGCATGTGAGG ATGATGAAGGCAATGATGTTGACATTCCCCCAGTATCCGTTTACTTCTCCTAG
AA sequence Show only first row Show all	>Potri.001G280600.2 pacid=42789841 polypeptide=Potri.001G280600.2.p locus=Potri.001G280600 ID=Potri.001G280600.2.v4.1 annot-version=v4.1 MQNHKILLSLPHLNFNFSKPKIKKISPSQTLYKLPKPNPNPNPPPPPPDSILPHWAKRLLYFMLPIKRPVEAVLVEGEEAPDNSISDSFSFKKNRIDCSL ESNVSSNKNSCVIGNCSDTDRDSNNRCKEELIMSPGDSKPMEIDEDLHSRQLAVYGRETMRRLFGSNVLVSGMHGLGVEIAKNLILAGVKSVTLHDEGIL ELWDLSSNFVFSENDVGKNRALASVQKLQDLNNAVTISTLITELTTEQLDKFQAVVFTDLNLDKAIEFNDYCHNHKPPISFIKAEVRGLFGSVFCDFGPE FTVFDVDGEEPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVKGMTEMNDGKPRKIKNSRPYSFNLEEDTTNFATYEKGGIVTQVKQPKVLNFK PLREAIKDPGEFLLSDFSKFDRPPLLHLAFQALDKFVSEMGRFPAAGSEEDAQKLISLASHINENSGDARVEDINPKLLRHFAFGARAVLNPMAAMFGGL VGQEVVKACSGKFHPLFQFFYFDSVESLPTANLDPRDFKPRNSRYDAQISVFGSKLQKKLEDANLFVVGSGALGCEFLKNLALMGVSCGEQGKLTLTDDD VIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLKIEALQNRVSPESENVFDDTFWENLTAVVNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN TQMIIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLVEKTPTEVNAYLSNPVDYTNAMTKAGDAQSRDTLERVLECLEKEKCETFQD CITWARLRFEDYFADRVKQLIFTFPEDASTSTGAPFWSAPKRFPHPLQFSTADPSHLHFVMAASILRAETFGISVPEWVKHPKTLAEAVEKVIVPEFQPR EDVKIETDEKATTISTVSVDDAAVINELIRKLEQCRHKLPPAYRMTPIQFEKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTA MATGLVCLELYKVLDGGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQDMSWTVWDRWILKDNPTLRELLQWLKHKGLDAYSISHGSCLLYNSMFPRHR DRMDRKMVDLVREVAKAELPAYRHHFDVVVACEDDEGNDVDIPPVSVYFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	0	1	Pt-ATUBA1.5
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.019G089800 [exp]	3.74	0.6558
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	12.88	0.6662
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	13.41	0.6045
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Potri.010G059000 [exp]	16.58	0.6406	Pt-GCS1.3
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	19.07	0.6296
AT3G17300		EMB2786	unknown protein		Potri.010G152100 [exp]	20.34	0.6141
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	23.40	0.6410
AT2G26800			Aldolase superfamily protein (...		Potri.006G036800 [exp]	28.98	0.5657
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	32.61	0.6239
AT3G19630			Radical SAM superfamily protei...		Potri.001G294900 [exp]	41.01	0.5660

Compare expression of checked genes

Potri.001G280600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.