Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58520 799 / 0 Protein kinase superfamily protein (.1) AT5G07140 712 / 0 Protein kinase superfamily protein (.1) AT2G17700 161 / 1e-42 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 150 / 8e-39 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 150 / 2e-38 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 140 / 3e-36 Protein kinase superfamily protein (.1.2.3.4) AT5G58950 133 / 4e-33 Protein kinase superfamily protein (.1) AT2G24360 127 / 2e-31 Protein kinase superfamily protein (.1) AT3G27560 125 / 2e-31 ATN1 Protein kinase superfamily protein (.1) AT5G50000 125 / 6e-31 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075900 [exp] 1047 / 0 AT5G58520 787 / 0.0 Protein kinase superfamily protein (.1) Potri.002G015400 [exp] 157 / 2e-41 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 153 / 1e-40 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 155 / 3e-40 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 152 / 3e-40 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 154 / 4e-40 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 150 / 2e-38 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 149 / 4e-38 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 148 / 4e-38 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031864 [exp] 838 / 0 AT5G58520 805 / 0.0 Protein kinase superfamily protein (.1) Lus10031294 [exp] 837 / 0 AT5G58520 801 / 0.0 Protein kinase superfamily protein (.1) Lus10022653 [exp] 153 / 3e-40 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 155 / 4e-40 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 157 / 7e-40 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 153 / 1e-39 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 148 / 5e-37 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10020374 [exp] 142 / 1e-36 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10002368 [exp] 129 / 2e-32 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 129 / 3e-32 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G280700.1 pacid=42793483 polypeptide=Potri.001G280700.1.p locus=Potri.001G280700 ID=Potri.001G280700.1.v4.1 annot-version=v4.1 ATGGCAGCGGCACTAGAGTGCTGGTCGAGCAGAGCCAGCACAGACGAGGACATGGTAGAACAAGTCTTGATGAGAACACAAGACAGATCAGAAACCTCAT CATCTTCAATCACCACAACAGCAACATCCTTACAATTATCTGATAAAATCACAAATCTTTCACAAAAAGACACTATTTCGTCGTCATCTGCAATGCAAAA AAGGCTTCAAAGATTGAGTCGAAATGTGTCTGAAGCCATTGCTTCACTTAAAAACTCATTGAATCTTGATTCACCACGTGACTCACTAGTGCAGCTAACG AGCTCCCAACAGGGTAATGCAAATGGTAATAAGAGCGAGAGATGTAGAAAGGTTGTGTGGGCGAGTGTTGTAAGGAACCTCACTCAGCTGTATCCGGGGA GCCAGTTGCCCGAGAAGCTTGTGTCCAATATCAGGAAGCACTATGATTCTTTGCCACTCAGTTATGCTCAGGCAGGGTTTGATATGAAAGAAGTGTTTTT GCACATTAAGTTGATAGAGCAGACATCAGTTGACGAGCAACCAGCAATAATGATACAAGAAGTGTCTGATGATGAGGTACAGGGCTGTGTATACAAACTC ACATTTGCTTGCAACTCGTCCATTTCGTGGCCCGCAATGTCTGGTGCATTGGATAGCGCTTCCATTTGTTGCAAGAAGATTCAGATCTTTGAAAAGAAAG GGTTTACTCTTGGGGTTGTTCTTCTTTTAGTCCAAGCTGGACAAGAGAAATCATTTAGAGCTCGGATAGAAAGCGCTTTAAAATCTTCTGTAAAGAAGTC CAAATCCACCACTGTGAAGCTTCCCTTCGGGCTTTGTGGGTGTCAAGAAGAGAATACTAAAGGAAACTTTGGTGAAATTGAAGAGGATTCTTGTGAACAG AATTGTAGGAATGCCATTGAGAATTCAAATGTGAATATTCAGCTTGAGATGCCCTTACCCACTTCGTCGATTGTTGTATCCGTCGATGAGTGGCAAACAG TTAATTCTGGCAGGGATGAGATAGGAAAATGGCTTTTGAACTCTGATAATCTTGAGTTCATTGATCAGATTGGACCAAATTCCTTTAAGGGAGTTCACAA GGGCAAAAGGGTGGGAATTGAGAAGCTTAAAGGGTGTGATAAAGGGAATTCTTATGAGTTCGAGCTCCGTAAAGATCTTTTGGAACTGATGACTTGCGGG CATAAGAACATTCTTCAATTTTATGGAATTTGTGTTGATGAAAATCATGGATTGTGTGTGGTGACCAAATTGATGGAAGGTGGATCTGTTAATGAGCTAA TGCTAAAGAATAAAAAGCTTCAAACTAAGGAAATAGTAAGAATTGCTACAGATGTAGCAGAAGGGATAAAGTTTATGAATGATCATGGTGTTGCATATAG AGACCTTAACACGCAACGAATTATGTTGGACCGGCACGGGAATGCTTGCTTAGGAGACATGGGCATAGTTACTGCTTGCAAGAGCATGGGTGAGGCGATG GAGTATGAAACAGATGGTTATCGTTGGCTAGCTCCAGAGATTATTGCAGGTGATCCAGAGAATATTACCGAGACATGGATGAGTAATGCATATAGTTTCG GGATGGTGGTTTGGGAGATGGTGACTGGCGAGGCTGCTTATGCTGCATATTCACCTGTGCAGGCAGCAGTTGGTATAGCTGCTTGTGGCCTAAGACCTGA GATCCCTAAGGACTGCCCGCAACTCCTGAAATCTCTGATGACCAAGTGCTGGAACAATTCCCCATCAAAGCGCCCTAAGTTCTCTGAAATTCTATCAATT TTGTTGCGGCCTAGCAACAATATCAATAGGTAA
AA sequence Show only first row Show all	>Potri.001G280700.1 pacid=42793483 polypeptide=Potri.001G280700.1.p locus=Potri.001G280700 ID=Potri.001G280700.1.v4.1 annot-version=v4.1 MAAALECWSSRASTDEDMVEQVLMRTQDRSETSSSSITTTATSLQLSDKITNLSQKDTISSSSAMQKRLQRLSRNVSEAIASLKNSLNLDSPRDSLVQLT SSQQGNANGNKSERCRKVVWASVVRNLTQLYPGSQLPEKLVSNIRKHYDSLPLSYAQAGFDMKEVFLHIKLIEQTSVDEQPAIMIQEVSDDEVQGCVYKL TFACNSSISWPAMSGALDSASICCKKIQIFEKKGFTLGVVLLLVQAGQEKSFRARIESALKSSVKKSKSTTVKLPFGLCGCQEENTKGNFGEIEEDSCEQ NCRNAIENSNVNIQLEMPLPTSSIVVSVDEWQTVNSGRDEIGKWLLNSDNLEFIDQIGPNSFKGVHKGKRVGIEKLKGCDKGNSYEFELRKDLLELMTCG HKNILQFYGICVDENHGLCVVTKLMEGGSVNELMLKNKKLQTKEIVRIATDVAEGIKFMNDHGVAYRDLNTQRIMLDRHGNACLGDMGIVTACKSMGEAM EYETDGYRWLAPEIIAGDPENITETWMSNAYSFGMVVWEMVTGEAAYAAYSPVQAAVGIAACGLRPEIPKDCPQLLKSLMTKCWNNSPSKRPKFSEILSI LLRPSNNINR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58520			Protein kinase superfamily pro...		Potri.001G280700 [exp]	0	1
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	2.23	0.9104
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	6.00	0.9055
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	10.19	0.8771
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.003G107600 [exp]	11.31	0.8955
AT3G25130			unknown protein		Potri.002G246400 [exp]	11.74	0.8997
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.010G134700 [exp]	13.22	0.8953
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	16.43	0.8906
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	16.88	0.8739	PGP1.2
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	18.43	0.8738
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	18.43	0.8714

Compare expression of checked genes

Potri.001G280700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.