Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58510 165 / 2e-47 unknown protein AT5G55060 64 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076000 [exp] 250 / 4e-78 AT5G58510 1237 / 0.0 unknown protein Potri.011G089300 [exp] 58 / 3e-10 AT5G55060 770 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031287 [exp] 170 / 3e-49 AT5G58510 1122 / 0.0 unknown protein Lus10031857 [exp] 117 / 1e-31 AT5G58510 468 / 2e-158 unknown protein Lus10020371 [exp] 86 / 7e-20 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10040061 [exp] 56 / 4e-09 AT5G55060 753 / 0.0 unknown protein Lus10000118 [exp] 52 / 4e-08 AT5G55060 319 / 1e-106 unknown protein Lus10032631 [exp] 52 / 5e-08 AT5G55060 643 / 0.0 unknown protein Lus10043118 [exp] 52 / 5e-08 AT5G55060 630 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13890 [poplar] [flax] Rab3-GTPase_cat Rab3 GTPase-activating protein catalytic subunit
Representative CDS sequence Show only first row Show all	>Potri.001G280832.2 pacid=42789338 polypeptide=Potri.001G280832.2.p locus=Potri.001G280832 ID=Potri.001G280832.2.v4.1 annot-version=v4.1 ATGGGCATCATATTCATCCCTTTGACACAGGATGGTTTGCATGGGACTGGAACGACGACATCAAGGCCTAGCATGAAGCATGTGGACACTGTATCTGATC TTTTGAAATCTTCTGATCATAACAGGAGGGGCTCAGCTGGTGTTGTGGGTTCTATGAAGCTTCTGAAGTCGTATCAGAGCATGCATGCCCCTTTCACACA GGAAGCTCCACTTATTACAGAAGACATGCATGAAGAAAGACTGCAGGCAGTTGAAGCTTCTGGGAATTCTTTTCATTCAAAGCAGCAAATCCAGATGCTG TTTTTGAAGATTTTATTCGGTGGCATTCACCGGGGGGATTGGGAGAATGATGATAGCAAGGAAAGTAGACCATCTAAAAGTCCAGGGAAAAAGGGTTTGA AGGATGATTTGCCACCACGAGGCCGACTTTCACAACAGATGTCTGAGCAAGGGAATTTATGGCAAAAGATTTGGAATGATGCTCCTGCTTTGCCAGCATA TGAGCAGAAACCTCTACTAGACCCCTTTCGGAAAGGATAG
AA sequence Show only first row Show all	>Potri.001G280832.2 pacid=42789338 polypeptide=Potri.001G280832.2.p locus=Potri.001G280832 ID=Potri.001G280832.2.v4.1 annot-version=v4.1 MGIIFIPLTQDGLHGTGTTTSRPSMKHVDTVSDLLKSSDHNRRGSAGVVGSMKLLKSYQSMHAPFTQEAPLITEDMHEERLQAVEASGNSFHSKQQIQML FLKILFGGIHRGDWENDDSKESRPSKSPGKKGLKDDLPPRGRLSQQMSEQGNLWQKIWNDAPALPAYEQKPLLDPFRKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58510			unknown protein		Potri.001G280832 [exp]	0	1
AT1G15200			protein-protein interaction re...		Potri.003G021900 [exp]	2.82	0.7484
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.013G096701 [exp]	12.68	0.7225
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Potri.008G073001 [exp]	15.68	0.7619
AT4G20020			unknown protein		Potri.004G218650 [exp]	18.57	0.7522
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	19.00	0.7270
AT5G05800			unknown protein		Potri.003G192350 [exp]	20.44	0.7090
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Potri.003G123800 [exp]	22.44	0.6584
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	24.61	0.6765
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.008G105500 [exp]	26.68	0.6358
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	27.20	0.7546

Compare expression of checked genes

Potri.001G280832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.