Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07080 266 / 9e-90 Thioredoxin superfamily protein (.1) AT5G01580 193 / 1e-61 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 165 / 1e-50 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12900 163 / 6e-50 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 150 / 1e-44 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2) AT4G12870 137 / 9e-40 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076200 [exp] 404 / 1e-144 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 212 / 4e-69 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.016G122200 [exp] 187 / 1e-58 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 185 / 4e-58 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 184 / 9e-58 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.012G107600 [exp] 183 / 2e-57 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 165 / 8e-51 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026384 [exp] 300 / 3e-103 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10042270 [exp] 296 / 8e-102 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 190 / 3e-60 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10022669 [exp] 158 / 7e-48 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10012503 [exp] 151 / 4e-45 AT1G07080 171 / 1e-52 Thioredoxin superfamily protein (.1) Lus10022670 [exp] 145 / 4e-40 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 134 / 7e-36 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF03227 [poplar] [flax] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Potri.001G281004.1 pacid=42790039 polypeptide=Potri.001G281004.1.p locus=Potri.001G281004 ID=Potri.001G281004.1.v4.1 annot-version=v4.1 ATGGCTTCAGTTAATTACCCATGCAAGAGCCTGGTTGTTTTGGTCTTTGTTAGTCTCTTAGAGTCTTCTACAACAATTCTCCCTTCAAATTCTGATAAAC TCTTCCTGGCACTGTACTATGAATCTCTATGTCCATATAGCGCTAATTCCATAGTGAGTTACCTTAACAAGCTCGTTGAAGATGACGAGCTTCTCTCAAT CGTTGATCTTTACCTCTCTCCTTGGGGTAATGCCAAAATCAGAGGAAACGACACCTTTGTTTGCCAGCATGGTCCATATGAATGCTTATTGAGTACAGTG GAAGCTTGTGCAATTCATCCCTGGCCTAAATTGGAAGACCATTTTCCTTTTGTTTATTGTGTCGAGAGATTGGTTTATGAGAGGAAGTACCCAGAATGGG AGTCTTGCTTCGAGGATTTGGGTTTGGATCCAAAGGCTGTTTCTGAGTGCTATACTGGTGGATATGGCGATGAGCTTGAAAAATATGCAACTGAAACAAA TGCCCTTCAGCCTCCACATAAATATGTGCCATGGGTGGTGGTTGATGGGCAGCCACTTTATGAGGATTATGAAGACTTCATAACATACATCTGCAAGGCC TACAAAGGCACTGCCACACCCAAAGCTTGCAGCAAACCATCTGGTTATTCCATCCAAAGGCCAAAAGCAAAATCAATCCCTCCAGTTTGCTATAGGGATA CGATTATATCAACGCTATTGGAACAAATTTAA
AA sequence Show only first row Show all	>Potri.001G281004.1 pacid=42790039 polypeptide=Potri.001G281004.1.p locus=Potri.001G281004 ID=Potri.001G281004.1.v4.1 annot-version=v4.1 MASVNYPCKSLVVLVFVSLLESSTTILPSNSDKLFLALYYESLCPYSANSIVSYLNKLVEDDELLSIVDLYLSPWGNAKIRGNDTFVCQHGPYECLLSTV EACAIHPWPKLEDHFPFVYCVERLVYERKYPEWESCFEDLGLDPKAVSECYTGGYGDELEKYATETNALQPPHKYVPWVVVDGQPLYEDYEDFITYICKA YKGTATPKACSKPSGYSIQRPKAKSIPPVCYRDTIISTLLEQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07080			Thioredoxin superfamily protei...		Potri.001G281004 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049500 [exp]	98.48	0.7146
AT2G35910			RING/U-box superfamily protein...		Potri.006G201500 [exp]	127.43	0.7106

Compare expression of checked genes

Potri.001G281004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.