Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10110 205 / 3e-68 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 190 / 1e-62 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G55510 45 / 5e-06 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT4G26670 45 / 7e-06 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076400 [exp] 238 / 3e-81 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 44 / 2e-05 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 43 / 4e-05 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.008G176500 [exp] 39 / 0.001 AT2G37410 228 / 1e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020223 [exp] 197 / 3e-65 AT3G10110 229 / 8e-78 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10026848 [exp] 193 / 2e-63 AT3G10110 224 / 5e-76 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032577 [exp] 41 / 0.0002 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 41 / 0.0002 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.001G281200.2 pacid=42790834 polypeptide=Potri.001G281200.2.p locus=Potri.001G281200 ID=Potri.001G281200.2.v4.1 annot-version=v4.1 ATGGCTAGCAATGAGAATCCAGGAAGTGAATCCAATAATAATGGCGGTGCTGCTTCTTCTTCTTCGACTTCAAAAGATGGAGAAACACCCACGCAAATTC AACCTTTTAGAATGCCTACAATAGAAGAGGTTCGTGCCCAAGACGTTTGGAATAACTGTGCTGTTCGCAGTGTTGCTAGTGGAGTCATGGGAGGTGGGCT GGGGTTGTTCATGGGACTGTTTCTAGGTGCATTGGATAATCCTATCATGCAAGATGAGATGACAGGAAGGCAGCAATTTATTTATACTGCGAAGCAAATG GGACGGAGGAGTTGGAGTTCTTGTAAAACATTTGCAATTATGGGCTTGGTTTTCTCAGCTGCTGAGTGTGTCACTGAGAAGGCCCGGGCAAAACATGACA CCACTAATACGGTTGTTGCTGGGTGTGTCACTGGAGGTACAATGTCAGCAAAAGGTGGCCCGAAAGCAGCATGTGTTGGCTGTGCTGGGTTTGCTGCATT CTCAGTTTTGATAGAGAAGTTCCTAGACAGACATACTTGA
AA sequence Show only first row Show all	>Potri.001G281200.2 pacid=42790834 polypeptide=Potri.001G281200.2.p locus=Potri.001G281200 ID=Potri.001G281200.2.v4.1 annot-version=v4.1 MASNENPGSESNNNGGAASSSSTSKDGETPTQIQPFRMPTIEEVRAQDVWNNCAVRSVASGVMGGGLGLFMGLFLGALDNPIMQDEMTGRQQFIYTAKQM GRRSWSSCKTFAIMGLVFSAAECVTEKARAKHDTTNTVVAGCVTGGTMSAKGGPKAACVGCAGFAAFSVLIEKFLDRHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.001G281200 [exp]	0	1
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	2.82	0.8234
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	4.24	0.8362	Pt-HSC70.1
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	8.00	0.8046
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	9.48	0.7914
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	10.58	0.8168
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.009G009300 [exp]	13.74	0.8081	SLP.1
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	14.00	0.7641
AT2G46230			PIN domain-like family protein...		Potri.002G166200 [exp]	14.49	0.7552
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	14.89	0.8124	Pt-LEN1.1
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	15.49	0.8133

Compare expression of checked genes

Potri.001G281200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.