Plant FIBer expression Database

Potri.001G281400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30120 162 / 4e-48 unknown protein
AT3G14750 155 / 2e-45 unknown protein
AT1G67170 110 / 4e-28 unknown protein
AT1G55170 109 / 5e-28 unknown protein
AT5G61920 53 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G076700
[exp]
375 / 1e-131 AT3G14750 173 / 8e-52 unknown protein
Potri.001G382700
[exp]
184 / 2e-56 AT3G14750 297 / 6e-100 unknown protein
Potri.003G037900
[exp]
129 / 6e-36 AT1G55170 259 / 2e-86 unknown protein
Potri.017G109700
[exp]
121 / 3e-31 AT1G67170 282 / 3e-91 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042267
[exp]
187 / 3e-57 AT2G30120 157 / 2e-45 unknown protein
Lus10026389
[exp]
184 / 5e-57 AT2G30120 159 / 2e-47 unknown protein
Lus10038143
[exp]
163 / 2e-48 AT3G14750 275 / 1e-91 unknown protein
Lus10013698
[exp]
163 / 3e-48 AT3G14750 298 / 3e-100 unknown protein
Lus10005563
[exp]
156 / 1e-45 AT3G14750 288 / 2e-96 unknown protein
Lus10035371
[exp]
122 / 3e-33 AT1G67170 284 / 2e-95 unknown protein
Lus10037647
[exp]
120 / 3e-32 AT1G55170 233 / 6e-76 unknown protein
Lus10030976
[exp]
123 / 4e-32 AT1G67170 294 / 1e-96 unknown protein
Lus10015629
[exp]
114 / 6e-30 AT1G55170 236 / 2e-77 unknown protein
Lus10015628
[exp]
105 / 5e-27 AT1G55170 211 / 3e-68 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G281400.1 pacid=42787953 polypeptide=Potri.001G281400.1.p locus=Potri.001G281400 ID=Potri.001G281400.1.v4.1 annot-version=v4.1
ATGGCAGGACGCAACCATCTCCAACTCCGAGAAATCCCTTTATCTCGAGCCGCCCTCCTTCCACACCCAACCACCGACCCACACCGCCTCCATGCCCGCC
CTCACCACCTCCTCCTCGAAGACCGTATAACAATCCAGCACCGTGAGATCCAATCCCTTCTTTTAGAAAATGAACGACTCGCAGCCGCACACTTTGCATT
AAAACAAGAACTCTCTTTATCACAACAAGACCTTCGTCACTTATCAACACTTGCTGCTGATGTCAAAGCCGAGAGAGACAATCAAGTTCGTGAAGTCTAT
GAAAGATCGTTGAAATCGGACGCTGAGTTACGGTCTATTGATGCTATGAGTGCTGAGCTTGTTCAGGTGAGGACGAATGTACAGAAACTTACTGCGCAAC
GCCAGGATATGACTGCACAATTGAAGGGGATGAATAATGAAATTGTTAAAGCTAAAACGGAAACGCAGCAGGTGGGTGTTCTTAAAGCGGAGATTGAGAC
TGTACAGCAAGAGATTCAAAGAGGAAGGGCTGCTATTGCATATGAGAAGAAGACACGGGCGATTAATCTTGAGCAAGAAAAGGTATTGGAGAAAAATATG
AATCTTGTGATTCGAGAAATTGAGAAACTTCGCGGTGAGTTTGCTAATGCAGAGAAAAGAGCAAGGGCAGCAGCTGCAGCAGCAAACCCAAGTCCTGGAT
ATGGTGGAAACTATGGCAGTGCTGAAGTGGGATGTGGAGGAAGTTCATATCCTGATCCTTATGGCTTGCAGCAGGTTCAGGTTGGTAGTGATTCTGGTCC
TACCTTTGCATCTGGAGTAATGTCTAATGGTCCCTATGACACTGCACATGGATGA
AA sequence
>Potri.001G281400.1 pacid=42787953 polypeptide=Potri.001G281400.1.p locus=Potri.001G281400 ID=Potri.001G281400.1.v4.1 annot-version=v4.1
MAGRNHLQLREIPLSRAALLPHPTTDPHRLHARPHHLLLEDRITIQHREIQSLLLENERLAAAHFALKQELSLSQQDLRHLSTLAADVKAERDNQVREVY
ERSLKSDAELRSIDAMSAELVQVRTNVQKLTAQRQDMTAQLKGMNNEIVKAKTETQQVGVLKAEIETVQQEIQRGRAAIAYEKKTRAINLEQEKVLEKNM
NLVIREIEKLRGEFANAEKRARAAAAAANPSPGYGGNYGSAEVGCGGSSYPDPYGLQQVQVGSDSGPTFASGVMSNGPYDTAHG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30120 unknown protein Potri.001G281400
[exp]
0 1
AT4G03030 Galactose oxidase/kelch repeat... Potri.005G221300
[exp]
1.00 0.9153
AT5G17900 microfibrillar-associated prot... Potri.013G065600
[exp]
2.44 0.9028
AT2G16880 Pentatricopeptide repeat (PPR)... Potri.008G044000
[exp]
6.00 0.9044
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Potri.001G350400
[exp]
6.63 0.8975
AT4G32420 Cyclophilin-like peptidyl-prol... Potri.006G250900
[exp]
6.70 0.8947
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Potri.012G080800
[exp]
7.14 0.8742
AT5G61230 PIA2, ANK6 phytochrome interacting ankyri... Potri.003G104400
[exp]
9.05 0.8298
AT4G21670 FRY2, FLP1, ATC... FIERY 2, C-terminal domain pho... Potri.011G049400
[exp]
9.89 0.8886
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.001G138900
[exp]
11.95 0.8815
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.005G180800
[exp]
12.64 0.8843 CHB904,CHB4.1

Potri.001G281400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.