Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 478 / 5e-167 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 474 / 1e-165 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 222 / 7e-67 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 221 / 2e-66 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G28080 217 / 5e-65 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 201 / 4e-59 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 201 / 1e-58 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 199 / 3e-58 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT3G21560 199 / 4e-58 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 197 / 2e-57 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281800 [exp] 555 / 0 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077200 [exp] 540 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G282100 [exp] 532 / 0 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077500 [exp] 514 / 0 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 499 / 3e-175 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 221 / 2e-66 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 216 / 2e-64 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052000 [exp] 207 / 3e-61 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 202 / 2e-59 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042261 [exp] 495 / 2e-173 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 451 / 2e-156 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 442 / 2e-151 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 403 / 8e-138 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 249 / 2e-80 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021438 [exp] 234 / 1e-71 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 220 / 5e-66 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 216 / 1e-64 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 215 / 3e-64 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 209 / 4e-63 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G281900.1 pacid=42793286 polypeptide=Potri.001G281900.1.p locus=Potri.001G281900 ID=Potri.001G281900.1.v4.1 annot-version=v4.1 ATGGGTACCCTCAGAACGGAACCAACCACCACCCTTCACGTGGTGGCGATGCCATATCCTGGAAGAGGCCACGTAAATCCCATGATGAATCTTTGCGAAC TCATGTCTTCCAGAAAACCAGACATCCTCTTCACCTTTGTTGTAACAGAGGAATGGTATGACCTCATCCACTCAGATGCTAAGAAGCCAGCCAACATCCA CTTTGCCACCATCCCCAACTGCATACCGTCTGAGGTAGGCCGTGCCAAAGACTTCCTGGGATTCTTGGAGGCTGTTGCGACAAAAATGGAAGCTCCTTTT GAGCAGCTCCTTGATCGGCTTGAGCTGCCGGTGGATGTTATTATAGCTGATACTTACCTGGACTGGGTGGTGCATGTTGGGAATCGGAGGAATATTCCTG TTGCTTCTCTTTGGACCATGTCAGCCTATGTTTTTTCACTGTCCCGTCATTTCGAGCTACTCGAGCAAAATGGCCATTTTCCGGTCGAGCTATCGGAACG AGGTGAAGAACGAGTGGACTACATTCCTGGAATTCCTCCAACGCGTTTAGTTGATTTTCCAAATATATTTCATGGAAATGGTCGACAAATCATGCCCCGA TCTCTAGAGGCTGTTTCAGTGGTGTCGAAAGCTCAGTATCTTCTGTTCACTTCTTTCTACGATCTTGAAGCCCAAGTAATCAGCGCTTTAAAACCCAAGT TTCCTTTTCCTGTATACCCTATTGGCCCTAGCATACCCTATTTCAAAATCAAAGACAACTCTTCAGTTATTGGCAGTAATCACAATGTGCCTGGCTACAT TGAATGGCTAAATTCCCAACCTGAAGGCTCCGTGCTATATGTTTCAATGGGAAGTTTCCTTTCAGTATCAAGTTCCCAAATGGATGAAATTGTTGCTGGG GTTCATAATAGCGGTGTTCGATTCTTGTGGGTGTCCCGAGGGGAAACAACTCCTTTTAAAGATGGTGGTGGTAATATGGGGCTAGTTGTGCCATGGTGCG ACCAAATAAGGGTGCTGTGCCATTCTGCTGTTGGAGGTTTTTGGACACATTGTGGGTGGAATTCCACTCTTGAAGCTGTTTTTGCTGGAGTTCCGATGCT TACTTCTCCTATATTTTGGGATCAAATTACAAACAGAAAATTAATTGTGGAAGACTGGCAGATAGGATGGAGAGTGAAAAGGGAGGAGGGAAGTGGAATT TTGGTGACACGAGAAGAAATTTCAAAGCTTGTGAAAAGTTTTATGGATGTAGAGAACATTGAGGTGAAAGCAATGCGGAAGAGAGCTAAAGAACTTCAAG AGACTTGTCGTGGAGCTATTGCAAAGGGTGGATCATCTGACACCAATCTTGAATCTTTCATAAGGGATATTTCACAAGGCCAGGCCAAGTGA
AA sequence Show only first row Show all	>Potri.001G281900.1 pacid=42793286 polypeptide=Potri.001G281900.1.p locus=Potri.001G281900 ID=Potri.001G281900.1.v4.1 annot-version=v4.1 MGTLRTEPTTTLHVVAMPYPGRGHVNPMMNLCELMSSRKPDILFTFVVTEEWYDLIHSDAKKPANIHFATIPNCIPSEVGRAKDFLGFLEAVATKMEAPF EQLLDRLELPVDVIIADTYLDWVVHVGNRRNIPVASLWTMSAYVFSLSRHFELLEQNGHFPVELSERGEERVDYIPGIPPTRLVDFPNIFHGNGRQIMPR SLEAVSVVSKAQYLLFTSFYDLEAQVISALKPKFPFPVYPIGPSIPYFKIKDNSSVIGSNHNVPGYIEWLNSQPEGSVLYVSMGSFLSVSSSQMDEIVAG VHNSGVRFLWVSRGETTPFKDGGGNMGLVVPWCDQIRVLCHSAVGGFWTHCGWNSTLEAVFAGVPMLTSPIFWDQITNRKLIVEDWQIGWRVKREEGSGI LVTREEISKLVKSFMDVENIEVKAMRKRAKELQETCRGAIAKGGSSDTNLESFIRDISQGQAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G281900 [exp]	0	1
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.004G153700 [exp]	1.00	0.8636	AGB1.2
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129850 [exp]	11.74	0.8001
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.002G021500 [exp]	12.72	0.8470	CYP1.2
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	12.80	0.8514
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	15.68	0.8588
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	18.33	0.8334	MRP9.1
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	20.37	0.8473
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	23.97	0.8163
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	28.77	0.8516
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.008G095200 [exp]	29.00	0.8141

Compare expression of checked genes

Potri.001G281900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.