Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 475 / 7e-166 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 468 / 3e-163 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 219 / 1e-65 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 211 / 9e-63 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G31750 208 / 6e-62 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G05675 204 / 1e-60 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 204 / 3e-60 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G22400 203 / 1e-59 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 201 / 5e-59 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 200 / 9e-59 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077200 [exp] 596 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 552 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 530 / 0 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077400 [exp] 520 / 0 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 511 / 7e-180 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.005G073800 [exp] 216 / 6e-65 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 216 / 6e-65 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032300 [exp] 213 / 1e-63 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023101 [exp] 208 / 1e-61 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026394 [exp] 617 / 0 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 478 / 1e-165 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 466 / 4e-162 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 371 / 2e-125 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10042259 [exp] 292 / 6e-97 AT2G30140 166 / 9e-49 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026393 [exp] 283 / 2e-93 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024583 [exp] 217 / 5e-65 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010712 [exp] 215 / 2e-64 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10032218 [exp] 211 / 2e-62 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 207 / 3e-61 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G282100.1 pacid=42790349 polypeptide=Potri.001G282100.1.p locus=Potri.001G282100 ID=Potri.001G282100.1.v4.1 annot-version=v4.1 ATGAATTCTGTTGGCCTGGAATCAACAGCAGTATGCCATGTGGTGGCGATGCCTTTTCCCGGCAGAGGCCACATCAACCCCATGATGAATTTCTGCAAGT TATTAGCTTCAAGAAAACATGATATTTTGATTACTTTTGTTGTCACAGAAGAGTGGCTTGGCTACATCAGCTCTGAGCCAAGGCCAGAATCTGTACGCTT GGTCACAATACCTAATGTCATCCCACCAGAGCGTCTAAAAGCAGTAGATTTTCCTGGATTTTATGAAGCTGTTATGACCAAGATGGAAGCTCCCTTTGAG CAGCTGCTTGATCAGTTTGAGATTCCTGTGACTGCTATAATTGGGGATATTGAGGTACGGTGGGCTATCAGCTTGGGAAACAGAAGGAATATTCCAGTGG CTGCTTTTTGGACGATGTCGGCAACATTTCTTTCAATGTTGTATCATTTTGATCTCTTCAAACAGAACCAGAAATCACCATCTAATTTGTTAGGACAAGT GGATTACATCCCTGGAATTTCTTCATCACATTTAGCAGAACTCCAAAAGGTCTTCCAAAAGAATGATCGAAGAGTATTGCAGCTAGCCCTGGAATGCATT TCAAAAGTGCCGCAAGCACAATATCTTCTGTTCACTTCTATCTATGAGCTTGAGCCCCAAGTCATGGACACTATGAAAGATACTCTTCAATTTCCTGTCT ATCCTATTGGACCTGCCATACCTTACTTAGAGCTTGAAGGCAATTTGTCAGGAACTAATTATAGTCATATGGCCCCAGACTACTTACAATGGCTAGATTC TCAACCTAAAGACTCTGTCTTATACATCTCTTTGGGAAGTTTCCTTTCTGTTTCAAGCACCCAAATGGATGAAATTATTGCTGGGCTTCAAGATAGTGGT GTTCGATACTTGTGGGTGGCACGCGGAGAAGCTTCTCGGTTAAAGGACATATGTAGTGATGATATGGGGCTAGTGTTGCCTTGGTGTGACCAGTTGAAAG TGCTGTGCCATTCTTCCATAGGGGGCTTTTGGACACATTGTGGATGGAACTCTACTCTAGAAGCAGTTTTTGCTGGTGTTCCAATGCTTACTTTCCCTCT ATTTTTGGATCAAGAACCAAATAGTAACCAAATTTTAGAAGGTTGGAGGATTGGTTGGAAGGTTAAGCGAGGCGTGAGAGAAGAAAATTTGTTAACCAGA GAGGAAATTGCAGAACTTGTGCAGAAGTTTATGGATTTGGAAAGCAATGAAGGGAAAGAAATGAGGAGAAGAGCAAGAGAACTTGGAAATATTTGTCAAC AAGGTATTGCTGAAGGCGGATCATCTACGACCAACCTTGATGCATTTATTAGGGATATTTCACTGGGCATCAGGCACTGA
AA sequence Show only first row Show all	>Potri.001G282100.1 pacid=42790349 polypeptide=Potri.001G282100.1.p locus=Potri.001G282100 ID=Potri.001G282100.1.v4.1 annot-version=v4.1 MNSVGLESTAVCHVVAMPFPGRGHINPMMNFCKLLASRKHDILITFVVTEEWLGYISSEPRPESVRLVTIPNVIPPERLKAVDFPGFYEAVMTKMEAPFE QLLDQFEIPVTAIIGDIEVRWAISLGNRRNIPVAAFWTMSATFLSMLYHFDLFKQNQKSPSNLLGQVDYIPGISSSHLAELQKVFQKNDRRVLQLALECI SKVPQAQYLLFTSIYELEPQVMDTMKDTLQFPVYPIGPAIPYLELEGNLSGTNYSHMAPDYLQWLDSQPKDSVLYISLGSFLSVSSTQMDEIIAGLQDSG VRYLWVARGEASRLKDICSDDMGLVLPWCDQLKVLCHSSIGGFWTHCGWNSTLEAVFAGVPMLTFPLFLDQEPNSNQILEGWRIGWKVKRGVREENLLTR EEIAELVQKFMDLESNEGKEMRRRARELGNICQQGIAEGGSSTTNLDAFIRDISLGIRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G282100 [exp]	0	1
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	3.00	0.8992
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	7.48	0.8662	PtrLAT1
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	9.89	0.8799
AT1G72690			unknown protein		Potri.017G119600 [exp]	16.49	0.8321
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	19.74	0.8580
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	20.73	0.8084
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	25.39	0.8623
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	27.92	0.8356
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	29.08	0.8319
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Potri.011G130533 [exp]	29.59	0.7402

Compare expression of checked genes

Potri.001G282100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.