Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) AT2G30160 414 / 1e-145 Mitochondrial substrate carrier family protein (.1) AT1G07025 120 / 5e-33 Mitochondrial substrate carrier family protein (.1) AT4G11440 120 / 4e-30 Mitochondrial substrate carrier family protein (.1) AT1G34065 117 / 4e-30 SAMC2 S-adenosylmethionine carrier 2 (.1) AT1G74240 114 / 5e-29 Mitochondrial substrate carrier family protein (.1) AT4G39460 113 / 1e-28 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT4G32400 103 / 7e-25 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 101 / 3e-24 Mitochondrial substrate carrier family protein (.1) AT3G53940 98 / 8e-23 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077600 [exp] 574 / 0 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 426 / 1e-150 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 128 / 7e-33 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 120 / 1e-31 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 114 / 3e-29 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.006G252100 [exp] 108 / 1e-26 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 105 / 7e-26 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 105 / 1e-25 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 102 / 2e-24 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042258 [exp] 475 / 8e-170 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 466 / 3e-166 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 108 / 8e-27 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 106 / 3e-26 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10002902 [exp] 107 / 4e-26 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 107 / 4e-26 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10006812 [exp] 106 / 5e-26 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10012597 [exp] 103 / 1e-24 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 102 / 1e-24 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 101 / 3e-24 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.001G282400.1 pacid=42790395 polypeptide=Potri.001G282400.1.p locus=Potri.001G282400 ID=Potri.001G282400.1.v4.1 annot-version=v4.1 ATGGCCACCGACGCCGCCGCCACCAAATTCCAAAACCCCGCTGATTTCCGGCCCGATTTCCACCCGGAGAAAATATCCTCCACAACCACCTACGATGGCC TCCATTTTTGGCAATACATGATTTCCGGTTCAATAGCCGGTCTTGTAGAACACATGGCTATGTTCCCTGTTGACACGGTCAAGACCCATATGCAAGCAAT CGGGTCTTGCCCGATTAAATCCGTAAGCGTAACTCATGTCCTCAATTCCCTTCTTAAATCCGAGGGCCCTGCTGCCCTTTACCGTGGCATTGCCGCGATG GCTCTCGGCGCTGGTCCCGCCCATGCTGTCCATTTTTCATTTTATGAAGTCTGTAAGAAACATCTGTCGCGAGATAACCCAAATAGTTCCATTGCGCATG CGGTTTCTGGTGTTTGTGCAACGGTTGCTAGCGATGCGGTTTTCACACCGATGGACATGGTAAAGCAGAGATTGCAATTGGGGAGTGATAGTGTCTATAA GGGTGTTTGGGATTGTGTTAAGAGGGTGGTGAGAGAAGAGGGGTTTGGTGCATTTTATGCTTCGTATAGGACTACTGTTTTGATGAATGCACCATTTACT GCGGTTTATTTTACGATTTATGAAGCTGCGAAGAAGGGTTTGATGGAGATTTCGCCGGATAGTGTGAATGATGAGAGGTGGGTTGTTCATGCTACTGCGG GTGCTGCTGCTGGAGCTTTGGCCGCTGCAGTTACCACACCACTTGATGTTGTTAAAACTCAATTGCAGTGTCAGGGTGTTTGTGGGTGTGACAGATTTAA AAGTGGTTCGATTAGAGATGTGATTAAAGCAATACTTGAAAAGGATGGCTACAGAGGCCTCATGAGAGGTTGGATCCCAAGGATGCTTTTCCATTCACCT GCTGCAGCAATCTCTTGGTCTACCTACGAAGCCTCCAAATCTTTCTTCCATAAACTCAATAGTAACAGTAACAGTGACAATGTCACTTGA
AA sequence Show only first row Show all	>Potri.001G282400.1 pacid=42790395 polypeptide=Potri.001G282400.1.p locus=Potri.001G282400 ID=Potri.001G282400.1.v4.1 annot-version=v4.1 MATDAAATKFQNPADFRPDFHPEKISSTTTYDGLHFWQYMISGSIAGLVEHMAMFPVDTVKTHMQAIGSCPIKSVSVTHVLNSLLKSEGPAALYRGIAAM ALGAGPAHAVHFSFYEVCKKHLSRDNPNSSIAHAVSGVCATVASDAVFTPMDMVKQRLQLGSDSVYKGVWDCVKRVVREEGFGAFYASYRTTVLMNAPFT AVYFTIYEAAKKGLMEISPDSVNDERWVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVIKAILEKDGYRGLMRGWIPRMLFHSP AAAISWSTYEASKSFFHKLNSNSNSDNVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07030			Mitochondrial substrate carrie...		Potri.001G282400 [exp]	0	1
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	2.00	0.8644
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.010G036500 [exp]	2.00	0.8548
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	2.64	0.9011
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	7.41	0.8477
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	8.36	0.8424
AT3G15040			Protein of unknown function, D...		Potri.006G209500 [exp]	8.48	0.8324
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.008G129500 [exp]	12.24	0.7780
AT3G16310			mitotic phosphoprotein N' end ...		Potri.001G188300 [exp]	12.64	0.8185
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	12.72	0.8598
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	19.74	0.8334

Compare expression of checked genes

Potri.001G282400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.