Plant FIBer expression Database

Potri.001G282600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30200 415 / 6e-146 EMB3147 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G077800
[exp]
496 / 2e-177 AT2G30200 564 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026397
[exp]
432 / 2e-152 AT2G30200 598 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Lus10042255
[exp]
428 / 8e-151 AT2G30200 595 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0323 Patatin PF00698 Acyl_transf_1 Acyl transferase domain
Representative CDS sequence
>Potri.001G282600.2 pacid=42789128 polypeptide=Potri.001G282600.2.p locus=Potri.001G282600 ID=Potri.001G282600.2.v4.1 annot-version=v4.1
ATGCGCAATATCCTTCACCACCACTACTACAACCCTCTTATCATACGCACACTTCCTTCTTCAACCATGGCATCTTCTTCTCTCGCTCTCCCTTCCGTCT
CTCTTAAAACCCTCTCTTTCACGTCTTCCGATGCTTTTAATAAAAGAATTCGAGGATTTGGTCTAAAAAATGGGAAACGATCTAGGATTCTTATGAGCTT
GTCGGTTGGATCTCAAAATCAAACTGTTGTTGTTGATGATACTTTGTTTATCGATTATAAGCCTACGTCTGCCTTTTTGTTTCCCGGTCAGGGTGCCCAA
GCTGTTGGGATGGGAAAGGAGGCTCAAAGCGTGTCAGCTGCTGCTCAGTTGTACGAAAAAGCAAATGATATATTGGGGTATGATCTTGTAGAACTCTGCA
CCAGTGGTCCGAAAAAAAAACTGGATTCAACTGTTATAAGCCAGCCTGCTATTTATGTCACAAGTCTAGCTGCAGTTGAAGTGCTCCGAGCTCGTGATGG
AGGCCAGCAGATAATTAACTCTGTTGATGTCACATGTGGTCTCAGCTTGGGAGAATATACTGCTTTAGCATTTGCTGGAGCCTTCAGCTTCGAAGATGGA
CTCAAGCTGGTCAAACTAAGGGGTGAAGCCATGCAGGAAGCTGCCGATGCTGCTGAAAGTGCCATGGTCAGTGTCATAGGACTGGACGCAGACAAAGTTC
AACAGTTGTGTGATGCAGCCAATCAAGATGTTGATGAGGATAATAAAGTTCAGATTGCGAATTACCTGTGTCCTGTGCGTTTAGCAGTTGCTGGTGCTTT
CCATACAAGTTTCATGGAACCAGCTGTCTCAAGATTGGAAGTTGCATTGGCAGCCACTGAAATTAGACAACCAAGAATACCAGTTATATCCAATGTTGAT
GCACAACCACATGCAGATCCTGCCACAATTAAAAGATCTTGGCACGCCAAGTGA
AA sequence
>Potri.001G282600.2 pacid=42789128 polypeptide=Potri.001G282600.2.p locus=Potri.001G282600 ID=Potri.001G282600.2.v4.1 annot-version=v4.1
MRNILHHHYYNPLIIRTLPSSTMASSSLALPSVSLKTLSFTSSDAFNKRIRGFGLKNGKRSRILMSLSVGSQNQTVVVDDTLFIDYKPTSAFLFPGQGAQ
AVGMGKEAQSVSAAAQLYEKANDILGYDLVELCTSGPKKKLDSTVISQPAIYVTSLAAVEVLRARDGGQQIINSVDVTCGLSLGEYTALAFAGAFSFEDG
LKLVKLRGEAMQEAADAAESAMVSVIGLDADKVQQLCDAANQDVDEDNKVQIANYLCPVRLAVAGAFHTSFMEPAVSRLEVALAATEIRQPRIPVISNVD
AQPHADPATIKRSWHAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30200 EMB3147 EMBRYO DEFECTIVE 3147, catalyt... Potri.001G282600
[exp]
0 1
AT1G05500 SYT5, NTMCTYPE2... synaptotagmin 5, ARABIDOPSIS T... Potri.006G063900
[exp]
7.93 0.7107
AT1G79950 RAD3-like DNA-binding helicase... Potri.001G180200
[exp]
13.49 0.7182
AT1G72570 AP2_ERF Integrase-type DNA-binding sup... Potri.001G169500
[exp]
25.09 0.6955 RAP15
AT1G08260 ESD7, EMB142, E... TILTED 1, EARLY IN SHORT DAYS ... Potri.004G185700
[exp]
28.84 0.6915
AT1G19880 Regulator of chromosome conden... Potri.002G026600
[exp]
31.62 0.6994
AT3G59670 unknown protein Potri.013G127100
[exp]
37.62 0.6785
AT2G07170 ARM repeat superfamily protein... Potri.006G079500
[exp]
49.09 0.6817
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.018G038000
[exp]
53.38 0.6650 MYB222
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Potri.010G044800
[exp]
61.26 0.6557
AT1G03700 Uncharacterised protein family... Potri.013G131700
[exp]
65.23 0.6538

Potri.001G282600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.