Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37060 604 / 0 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 595 / 0 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT2G13620 407 / 7e-130 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G53720 305 / 7e-91 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G05580 302 / 7e-90 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 296 / 2e-88 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G44900 293 / 6e-87 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 291 / 3e-86 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT5G41610 290 / 9e-86 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT2G31910 288 / 7e-85 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078000 [exp] 607 / 0 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.007G105200 [exp] 419 / 3e-134 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 353 / 2e-109 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 330 / 8e-101 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 320 / 8e-97 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 319 / 1e-96 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.016G127800 [exp] 317 / 3e-96 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123800 [exp] 313 / 5e-95 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 309 / 2e-92 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031283 [exp] 742 / 0 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10026398 [exp] 719 / 0 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10042254 [exp] 711 / 0 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10031852 [exp] 663 / 0 AT5G37060 605 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10030013 [exp] 411 / 6e-131 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 405 / 6e-128 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 316 / 3e-95 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10026408 [exp] 305 / 3e-91 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 299 / 1e-88 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10043128 [exp] 297 / 3e-88 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.001G282800.1 pacid=42789413 polypeptide=Potri.001G282800.1.p locus=Potri.001G282800 ID=Potri.001G282800.1.v4.1 annot-version=v4.1 ATGGTTAGGATAGCTGATGACCCACTCCACAATTCCATTTCCACAGAAGCATTGTATGTTCCTAATTCTGATAGATTTCCAGTCACTAACAACGTTGTTC CCAATGAATTATACCATTACAAAGATTCATTTTCATGTCGCGCAACTCGTCAAGCTGGGAACTCGTCAGATTATTTTTACTCGAATGACGGGTTAAATTT CCACTTCGGTGTAATATTGTTCGATGCAGTTTTAGTCATTTTGATGACTCGCATTGTCGCCTTTCTTCTCAGGCCTTGCAAACAACCCAAGGTTGTCTCT GAGGTCATTGGTGGTATAATCCTTGGTCCGTCTGTCCTAAGCATCGACAAGAAGTTTAATGGGGCTTTTTTCTCAGCAAATGTCAAGTATATCATTGGAA ATATTGGAACTATGGGCTTCATGTACTTCCTTTTCATCATTGGGGTTAAGATGGATCTCTCTGTGATCAAATTTTCGAGAAGGAAATATAAAATGATAAC ATTGGCTGGAGTGATCATTCCTCTAGTCACAGGTACAATAGTTGGAAACATCATTAGACCGTCAATGGATAAAAAACTTTCTAAACCTTCTTCGATTGGA AGAGTTGTTTTAGCAATGGCTGTAACAGGATATGCTGTCATTTATCCTATCCTTCAGGAACTAAACCTGCTCAGCTCTGAGATTGGGCAAATGGCCCTGG CTATCGCGATAATAACGGACGGAATAGCGATAATCTTGTTGATCATATCTGGGGCGCTAAAACAAACAGATGTTGGTGTCGATGCCGCTTTATGGTACAT GATCTCTGTAATAGCTTTCATGGTTTTCAGTGCTATCACCCTTCAACAAGCAATGATATGGATTCTTGGAAAAAACCCCGAAGGGAAGCTTATCGAGCAA GTTTATGTGGTTCTCATTTTGTTAGGGGCTTTGGTGATGAGTTTTCTTACAGACATGCTCGGATTGGGCATTGTTACGGGATGCATGTTGACGGGGCTTG TGATACCCGATGGTCCACCACTCGGATCATCAATTGTGGCGAGGAGCGAGACATTCATAATGAACTTCTTCATGCCGTTTTCATATGTGTACATCGGAAT GTCCGTGGATCTTTCTGCAATGACAAGTGTTTCTTGGTCTGGATTGGCACCACTTTTTACATTGGCTATGTCAGGAATTGTGTTTAAACTGCTTGCAACT CTTGTGACTTCTCTCTTAGTGAAAATACCATTTAGAGATGCTCTTACTCTCACGCTCATTCTGAATTTGAGAGGTCAGCAGGAGTTCATGTTAATAATGC ATTGGAAGGAAAAATCGGTTATAGAAATCCCATCTTACACGATGCTGGTGCTATTGGTAACAGCTGTGACAGCAATTGCCACGCCTCTCATCAGATTCCT CTACGATCCAACTAGGCCATATATAGTGAACACGAGGAGAACCATCCAATACACCCCTCCACACGAAGAACTTAAAGTAGTAGCTTGTGTCCACAACCAA GATAGTGTGGCCACCCTCATCAATCTTTTTGAATTCTCTTGTTCATCTCGGAGAAATTTGTCAGTCTATGCTCTCTGCCTCACTGAGCTGAATGGCCGTG CAGCCCCTTTGTTGATAGATCACGAGAAGCAGAAAATGACTTTCAATTACTCAGGTTACGATTCCACATATAATGCCTTAAAAATCTACATAGAAACCAA AAGGGACGTGATGGAGATCCATTCCTTCACGGCAGTGGTTCCAAAGCAAACAATGTATCAAGACATCTGCAAGTTGGCTATGATAAAAGAAGCCGATCTT GTCATTTTACCTTTCCATATGGAATGGAGGGATAGCGTGAGAATGACTGAACTCCATCATCAACGAAGAACGCCATCTGTGCTCTCAAATGTGTTGGACC ACGCTCCATGCTCCGTTGGAATTCTTGTTCACAAGGTTCACTTATTGGGCCCCCTTTTTGATCATTCCTTCAACAGCTCTCCTCGCCATGTTCTTGTGCT ATTTTTAGGGGGAGCAGACGCTCGAGAGGCACTTTTTTATGCAGATAGAATTCTAATGAATCCGAATGTGTTCCTTACGGTGATTAGGTTCCTTTCTCAT CATCATCACAGAGAATATGAGCAAGAGAAGAAGCTTGATGATGGGGTGATCATATCATTTCGGGAAAGGAATGGAAGAAATAAACGTGTGGTCTGTAGAG AAGTTGTAATGAAGAATGGAGAAGAAACATTGGCTACAATCCAGGCATTTGGTAATGATGTGCATTTTGACCTATGGATCCTAGGAAGGCACAAAGGGAT CAATCCAGTTCTCCTCAAAGGATTATCATCAGATTGGTGTGAACATCTTGAATTAGGAGTGATAGGTGATTATATCTCGTCCATGGATTTCGATGGCACC ACTTCTATTTTGGTGGTGCAACAACAAACTTTGAGAGGGTAA
AA sequence Show only first row Show all	>Potri.001G282800.1 pacid=42789413 polypeptide=Potri.001G282800.1.p locus=Potri.001G282800 ID=Potri.001G282800.1.v4.1 annot-version=v4.1 MVRIADDPLHNSISTEALYVPNSDRFPVTNNVVPNELYHYKDSFSCRATRQAGNSSDYFYSNDGLNFHFGVILFDAVLVILMTRIVAFLLRPCKQPKVVS EVIGGIILGPSVLSIDKKFNGAFFSANVKYIIGNIGTMGFMYFLFIIGVKMDLSVIKFSRRKYKMITLAGVIIPLVTGTIVGNIIRPSMDKKLSKPSSIG RVVLAMAVTGYAVIYPILQELNLLSSEIGQMALAIAIITDGIAIILLIISGALKQTDVGVDAALWYMISVIAFMVFSAITLQQAMIWILGKNPEGKLIEQ VYVVLILLGALVMSFLTDMLGLGIVTGCMLTGLVIPDGPPLGSSIVARSETFIMNFFMPFSYVYIGMSVDLSAMTSVSWSGLAPLFTLAMSGIVFKLLAT LVTSLLVKIPFRDALTLTLILNLRGQQEFMLIMHWKEKSVIEIPSYTMLVLLVTAVTAIATPLIRFLYDPTRPYIVNTRRTIQYTPPHEELKVVACVHNQ DSVATLINLFEFSCSSRRNLSVYALCLTELNGRAAPLLIDHEKQKMTFNYSGYDSTYNALKIYIETKRDVMEIHSFTAVVPKQTMYQDICKLAMIKEADL VILPFHMEWRDSVRMTELHHQRRTPSVLSNVLDHAPCSVGILVHKVHLLGPLFDHSFNSSPRHVLVLFLGGADAREALFYADRILMNPNVFLTVIRFLSH HHHREYEQEKKLDDGVIISFRERNGRNKRVVCREVVMKNGEETLATIQAFGNDVHFDLWILGRHKGINPVLLKGLSSDWCEHLELGVIGDYISSMDFDGT TSILVVQQQTLRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.001G282800 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Potri.017G062900 [exp]	3.00	0.7934
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	8.12	0.8286	SKP1.4
AT1G13690		ATE1	ATPase E1 (.1)		Potri.010G157000 [exp]	9.16	0.8063
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	13.41	0.8056
					Potri.014G125800 [exp]	17.66	0.7950
					Potri.002G048450 [exp]	22.58	0.7990
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G001700 [exp]	23.36	0.6955
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	25.92	0.7966
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.002G012300 [exp]	29.89	0.6620
AT4G34210		ASK11	SKP1-like 11 (.1)		Potri.012G085200 [exp]	32.74	0.7041

Compare expression of checked genes

Potri.001G282800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.