Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74520 100 / 1e-24 ATHVA22A HVA22 homologue A (.1) AT1G69700 86 / 2e-19 ATHVA22C HVA22 homologue C (.1) AT5G62490 83 / 2e-18 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT2G42820 74 / 4e-15 HVA22F HVA22-like protein F (.1) AT5G50720 68 / 1e-13 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 68 / 2e-13 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT2G19380 59 / 7e-09 RNA recognition motif (RRM)-containing protein (.1) AT5G61190 57 / 5e-08 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT4G36720 46 / 3e-05 HVA22K HVA22-like protein K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078500 [exp] 655 / 0 AT1G74520 104 / 6e-26 HVA22 homologue A (.1) Potri.017G139000 [exp] 280 / 5e-89 AT1G74520 119 / 5e-32 HVA22 homologue A (.1) Potri.012G069300 [exp] 96 / 6e-23 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.015G062800 [exp] 94 / 3e-22 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.001G006000 [exp] 81 / 1e-17 AT2G42820 235 / 1e-80 HVA22-like protein F (.1) Potri.012G101600 [exp] 71 / 1e-14 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G099700 [exp] 71 / 2e-14 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.005G152100 [exp] 75 / 5e-14 AT1G69700 102 / 1e-25 HVA22 homologue C (.1) Potri.014G148600 [exp] 66 / 5e-13 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023605 [exp] 98 / 4e-23 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10024234 [exp] 97 / 1e-22 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10037191 [exp] 92 / 3e-21 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10042193 [exp] 89 / 4e-18 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10008623 [exp] 76 / 1e-15 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10031386 [exp] 75 / 1e-15 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10032557 [exp] 74 / 2e-15 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10010944 [exp] 73 / 9e-15 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10043186 [exp] 71 / 3e-14 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10020460 [exp] 67 / 1e-11 AT2G19380 53 / 2e-07 RNA recognition motif (RRM)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type
Representative CDS sequence Show only first row Show all	>Potri.001G283000.2 pacid=42791295 polypeptide=Potri.001G283000.2.p locus=Potri.001G283000 ID=Potri.001G283000.2.v4.1 annot-version=v4.1 ATGATGAGTTTTGTGGGTGTTGTAAAATTTGTGGTGAAATGCCTTGACATTGTTGCCTGGCCTGTATTTGGTTTGGGTTATCCTTTATGTGCTTCCATTC AAGCGATCGAGACTAATTCAAACTCAGACACCCAGAAACTGATCGCTTATTGGGTCTCCATTTCTGTGGTTTTGCTCTTTGAACGTGCTTTTCAGCTTGA ATGGCTAACCTTCTGGCCATACATTAAGCTAATGATTGTCGGCTGCTTGGTTCTGCCTGACTTTGATGGTTCCCTTTGTGTCTATCAACGCCTTGTTCAT CCATGCCTATCCATGGACCTAAGAATCATCATCTGCCAGTTCAAAAAGCTGGAGGAGTTGTTTTTCAAGAAAGATGATTTTCTTGTTGAGGTGGAGAGAT ATGTGAAGGAAAATGGCATTGATGCTTTGGAGAATCTCATTGCTTCCACGAAAAGGAGTGCAAAGCCTAATGTTGCTGTGAATGAGATCAAGGCAGTTGC AGCAGAGGATAGGCTGAAGTTCGAGCCACCAAATCTTCAAGTTCCACTCAAAGACAGTAGTGCTGCCAAAATAACAGAGAAAATAGAAGTTGCATCAACC AAGCAGCTAAAGCTGGAACAACCTAAACTTCCGGTTCAATTAAACGATAGCAATGCAGTGGAAATAACAGAGGAAAAAGAAGTTGCATCAACCACGCAGT TAAAGTTTGAACAACCTAAACTTCCAGTTCTACCCAGAGACAGTAATGCTGTGGAAATAACAGAGAAAAAAGAAGTCTCATCAACCAACCAGGTTAGACA AATAGAACCTAACATTGGTCAGACAGAAAACAGAACATTTCAGCCCCTGAAGAACATAACTACAGCAGCAGAAGCAATAGGAGGCAGAGATCTTTACGAG ATACTACCTCCTGAGAAAGTCCAAAAGGTATGGACTTGTGCTCTATGTCAAGTAACAGCCCAAAGTGAGACAGTTCTTAATTCACATCTGCAAGGGAAAC GACACAAGGCAGCTCGTGAACAGTTAAAAGTGAAGAGTCAGACACCAAAAGGTGAGGTTTCCTCTGCTTCAGTGGGAAAGAAATCAAATGTTACCATGGC AACCGCAAGGATTGGTGTTAGAGATCATACTGGCATATTATCTCCTCAGAATGCCCAAAAAGTTTGGACTTGTCTTACATGCCAGGTAACGCTTAAAAGT CAGACAGACATTAACTCACATCTTCAAGGAAAACAACACGAGCAAGCTCGTGCGCTGCTGAACTCCAAGAACCAGGCATCACATAGCAATGCTTCTTCTG CTTCAGTAGGAAAGAAAACTAATTTTCCTGAAAACAAGCCAGAGAAGTGTACAATCAGCAATAATACTTCACCTGAAAATAGAATACATGAAGCGAAGAA GCAAGGCAAGCAAGAGAACCCGATGAAGAGCCTATTTGTTGAGATAAGAAATTCCAAGTGGCGTTGTACAATCTGCAATGTAAGTTGCACCAGTGAGGGA GACATGGCCTGTCATCTTAAAGGGAATAAGCACTTGGATGTTAGCATTTCCAAGTGGCAGTGCACCATCTGTAATGTAAATTGTACCAGTGAGGGAGACT TGGCCTGTCATCTTAAAGGGAATAAGCACTTGGCTGTTAGCATTTCCAAGTGGCAGTGCACCATTTGTAATGTAAATTGCACCAGTGAGGGAGACATCCA CTGTCACCTTAATGGGAATAAGCACTTGGCTAGGATGCGAGAATTGGATGGTCTTGGAGGCAGTCGGCATGCCTGA
AA sequence Show only first row Show all	>Potri.001G283000.2 pacid=42791295 polypeptide=Potri.001G283000.2.p locus=Potri.001G283000 ID=Potri.001G283000.2.v4.1 annot-version=v4.1 MMSFVGVVKFVVKCLDIVAWPVFGLGYPLCASIQAIETNSNSDTQKLIAYWVSISVVLLFERAFQLEWLTFWPYIKLMIVGCLVLPDFDGSLCVYQRLVH PCLSMDLRIIICQFKKLEELFFKKDDFLVEVERYVKENGIDALENLIASTKRSAKPNVAVNEIKAVAAEDRLKFEPPNLQVPLKDSSAAKITEKIEVAST KQLKLEQPKLPVQLNDSNAVEITEEKEVASTTQLKFEQPKLPVLPRDSNAVEITEKKEVSSTNQVRQIEPNIGQTENRTFQPLKNITTAAEAIGGRDLYE ILPPEKVQKVWTCALCQVTAQSETVLNSHLQGKRHKAAREQLKVKSQTPKGEVSSASVGKKSNVTMATARIGVRDHTGILSPQNAQKVWTCLTCQVTLKS QTDINSHLQGKQHEQARALLNSKNQASHSNASSASVGKKTNFPENKPEKCTISNNTSPENRIHEAKKQGKQENPMKSLFVEIRNSKWRCTICNVSCTSEG DMACHLKGNKHLDVSISKWQCTICNVNCTSEGDLACHLKGNKHLAVSISKWQCTICNVNCTSEGDIHCHLNGNKHLARMRELDGLGGSRHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	0	1
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.012G118700 [exp]	2.82	0.8071
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	4.89	0.7503
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	9.16	0.7362
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	12.00	0.7016
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	13.96	0.7210
AT3G14160			2-oxoglutarate-dependent dioxy...		Potri.003G070100 [exp]	15.65	0.7016
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	17.32	0.7057
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	17.60	0.6475
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	22.69	0.7378
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.010G129700 [exp]	23.49	0.6946

Compare expression of checked genes

Potri.001G283000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.